# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Oef03961.fasta.nr -Q ef03961.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ef03961, 226 aa vs /cdna2/lib/nr/nr library 3020366983 residues in 8842601 sequences statistics sampled from 60000 to 8823878 sequences Expectation_n fit: rho(ln(x))= 4.5614+/-0.000185; mu= 11.1940+/- 0.010 mean_var=71.2031+/-13.445, 0's: 32 Z-trim: 104 B-trim: 0 in 0/66 Lambda= 0.151993 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(8842601) gi|20141070|sp|Q9Y508.1|RN114_HUMAN RecName: Full= ( 228) 1621 364.1 1.2e-98 gi|30584367|gb|AAP36432.1| Homo sapiens zinc finge ( 229) 1621 364.1 1.2e-98 gi|50401742|sp|Q6J212.1|RN114_PANTR RecName: Full= ( 228) 1614 362.5 3.4e-98 gi|34364607|emb|CAE45709.1| hypothetical protein [ ( 234) 1596 358.6 5.3e-97 gi|67971962|dbj|BAE02323.1| unnamed protein produc ( 228) 1595 358.4 6.1e-97 gi|109091895|ref|XP_001102907.1| PREDICTED: simila ( 325) 1595 358.5 7.8e-97 gi|50401716|sp|Q6J1I8.1|RN114_PIG RecName: Full=RI ( 228) 1527 343.4 1.9e-92 gi|73992577|ref|XP_534453.2| PREDICTED: similar to ( 520) 1521 342.5 8.3e-92 gi|146231892|gb|ABQ13021.1| zinc finger protein 31 ( 229) 1505 338.6 5.3e-91 gi|73921297|sp|Q4U5R4.1|RN114_BOVIN RecName: Full= ( 230) 1505 338.6 5.3e-91 gi|32470618|sp|Q9ET26.2|RN114_MOUSE RecName: Full= ( 229) 1466 330.1 2e-88 gi|50401717|sp|Q6J2U6.1|RN114_RAT RecName: Full=RI ( 229) 1444 325.2 5.7e-87 gi|47499960|gb|AAT28738.1| Zfp313 protein [Xenopus ( 226) 1425 321.1 1e-85 gi|126303289|ref|XP_001378899.1| PREDICTED: simila ( 223) 1322 298.5 6.3e-79 gi|194224522|ref|XP_001501261.2| PREDICTED: simila ( 183) 1237 279.8 2.2e-73 gi|194377272|dbj|BAG63197.1| unnamed protein produ ( 191) 1213 274.5 8.8e-72 gi|47779142|gb|AAT38455.1| ZFP313 [Gallus gallus] ( 225) 1182 267.8 1.1e-69 gi|53127780|emb|CAG31219.1| hypothetical protein [ ( 225) 1182 267.8 1.1e-69 gi|148674571|gb|EDL06518.1| zinc finger protein 31 ( 209) 1169 264.9 7.5e-69 gi|26348203|dbj|BAC37741.1| unnamed protein produc ( 217) 1039 236.4 3e-60 gi|224078713|ref|XP_002187039.1| PREDICTED: zinc f ( 205) 1026 233.5 2e-59 gi|149639818|ref|XP_001507862.1| PREDICTED: simila ( 325) 1007 229.6 5.1e-58 gi|74177968|dbj|BAE29779.1| unnamed protein produc ( 146) 971 221.3 6.9e-56 gi|48375122|gb|AAT42230.1| ZFP313 protein [Xenopus ( 223) 937 214.1 1.6e-53 gi|48374375|gb|AAT42019.1| ZFP313 protein [Oryzias ( 220) 917 209.7 3.4e-52 gi|56540942|gb|AAH87369.1| LOC496148 protein [Xeno ( 227) 903 206.6 2.9e-51 gi|209152063|gb|ACI33095.1| Zinc finger protein 31 ( 227) 894 204.6 1.1e-50 gi|48374377|gb|AAT42020.1| ZFP313 protein [Oncorhy ( 227) 886 202.9 3.8e-50 gi|148674569|gb|EDL06516.1| zinc finger protein 31 ( 176) 875 200.4 1.7e-49 gi|50927142|gb|AAH79515.1| Ring finger protein 114 ( 221) 853 195.6 5.7e-48 gi|119596048|gb|EAW75642.1| zinc finger protein 31 ( 111) 797 183.0 1.7e-44 gi|47223121|emb|CAG11256.1| unnamed protein produc ( 280) 777 179.1 6.9e-43 gi|82075037|sp|Q5F3B2.1|RN166_CHICK RecName: Full= ( 244) 759 175.1 9.7e-42 gi|81863790|sp|Q6J1I7.1|RN166_RAT RecName: Full=RI ( 237) 755 174.2 1.8e-41 gi|110287943|sp|Q3KPU8.1|RN166_XENLA RecName: Full ( 241) 752 173.5 2.8e-41 gi|74762644|sp|Q96A37.1|RN166_HUMAN RecName: Full= ( 237) 751 173.3 3.2e-41 gi|149042829|gb|EDL96403.1| rCG32152, isoform CRA_ ( 111) 746 171.9 4.1e-41 gi|110645445|gb|AAI18812.1| Ring finger protein 16 ( 241) 748 172.6 5.1e-41 gi|158255276|dbj|BAF83609.1| unnamed protein produ ( 237) 746 172.2 6.9e-41 gi|125822670|ref|XP_001337089.1| PREDICTED: simila ( 241) 746 172.2 7e-41 gi|148877360|gb|AAI46100.1| RNF166 protein [Bos ta ( 237) 744 171.8 9.3e-41 gi|126304964|ref|XP_001376864.1| PREDICTED: simila ( 299) 744 171.9 1.1e-40 gi|73956929|ref|XP_851172.1| PREDICTED: similar to ( 237) 741 171.1 1.5e-40 gi|194386226|dbj|BAG59677.1| unnamed protein produ ( 155) 726 167.6 1.1e-39 gi|229297793|gb|EEN68425.1| hypothetical protein B ( 213) 704 162.9 3.8e-38 gi|224064545|ref|XP_002192564.1| PREDICTED: ring f ( 236) 644 149.8 3.7e-34 gi|149596630|ref|XP_001514759.1| PREDICTED: simila ( 256) 628 146.4 4.5e-33 gi|194208893|ref|XP_001488057.2| PREDICTED: simila ( 188) 618 144.0 1.6e-32 gi|51703705|gb|AAH81234.1| MGC85497 protein [Xenop ( 126) 588 137.3 1.2e-30 gi|72010969|ref|XP_785146.1| PREDICTED: hypothetic ( 192) 557 130.7 1.8e-28 >>gi|20141070|sp|Q9Y508.1|RN114_HUMAN RecName: Full=RING (228 aa) initn: 1621 init1: 1621 opt: 1621 Z-score: 1928.4 bits: 364.1 E(): 1.2e-98 Smith-Waterman score: 1621; 100.000% identity (100.000% similar) in 226 aa overlap (1-226:3-228) 10 20 30 40 50 ef0396 AQQRDCGGAAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 MAAQQRDCGGAAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPK 10 20 30 40 50 60 60 70 80 90 100 110 ef0396 KPVCGVCRSALAPGVRAVELERQIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYIMEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 KPVCGVCRSALAPGVRAVELERQIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYIMEG 70 80 90 100 110 120 120 130 140 150 160 170 ef0396 VKATIKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICASMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 VKATIKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICASMP 130 140 150 160 170 180 180 190 200 210 220 ef0396 WGDPNYRSANFREHIQRRHRFSYDTFVDYDVDEEDMMNQVLQRSIIDQ :::::::::::::::::::::::::::::::::::::::::::::::: gi|201 WGDPNYRSANFREHIQRRHRFSYDTFVDYDVDEEDMMNQVLQRSIIDQ 190 200 210 220 >>gi|30584367|gb|AAP36432.1| Homo sapiens zinc finger pr (229 aa) initn: 1621 init1: 1621 opt: 1621 Z-score: 1928.4 bits: 364.1 E(): 1.2e-98 Smith-Waterman score: 1621; 100.000% identity (100.000% similar) in 226 aa overlap (1-226:3-228) 10 20 30 40 50 ef0396 AQQRDCGGAAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 MAAQQRDCGGAAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPK 10 20 30 40 50 60 60 70 80 90 100 110 ef0396 KPVCGVCRSALAPGVRAVELERQIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYIMEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 KPVCGVCRSALAPGVRAVELERQIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYIMEG 70 80 90 100 110 120 120 130 140 150 160 170 ef0396 VKATIKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICASMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 VKATIKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICASMP 130 140 150 160 170 180 180 190 200 210 220 ef0396 WGDPNYRSANFREHIQRRHRFSYDTFVDYDVDEEDMMNQVLQRSIIDQ :::::::::::::::::::::::::::::::::::::::::::::::: gi|305 WGDPNYRSANFREHIQRRHRFSYDTFVDYDVDEEDMMNQVLQRSIIDQL 190 200 210 220 >>gi|50401742|sp|Q6J212.1|RN114_PANTR RecName: Full=RING (228 aa) initn: 1614 init1: 1614 opt: 1614 Z-score: 1920.1 bits: 362.5 E(): 3.4e-98 Smith-Waterman score: 1614; 99.558% identity (100.000% similar) in 226 aa overlap (1-226:3-228) 10 20 30 40 50 ef0396 AQQRDCGGAAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|504 MAAQQRDCGGAAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPK 10 20 30 40 50 60 60 70 80 90 100 110 ef0396 KPVCGVCRSALAPGVRAVELERQIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYIMEG ::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::: gi|504 KPVCGVCRSALAPGVRAVELERQIESTETSCHGCRKKFFLSKIRSHVATCSKYQNYIMEG 70 80 90 100 110 120 120 130 140 150 160 170 ef0396 VKATIKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICASMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|504 VKATIKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICASMP 130 140 150 160 170 180 180 190 200 210 220 ef0396 WGDPNYRSANFREHIQRRHRFSYDTFVDYDVDEEDMMNQVLQRSIIDQ :::::::::::::::::::::::::::::::::::::::::::::::: gi|504 WGDPNYRSANFREHIQRRHRFSYDTFVDYDVDEEDMMNQVLQRSIIDQ 190 200 210 220 >>gi|34364607|emb|CAE45709.1| hypothetical protein [Homo (234 aa) initn: 1596 init1: 1596 opt: 1596 Z-score: 1898.6 bits: 358.6 E(): 5.3e-97 Smith-Waterman score: 1596; 98.230% identity (99.558% similar) in 226 aa overlap (1-226:9-234) 10 20 30 40 50 ef0396 AQQRDCGGAAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQ ::::::::::.::::::.::::::::::::: :::::::::::::::::::: gi|343 GESGSKMAAQQRDCGGAAHLAGPAAKADPLGRFTCPVCLVVYEKPVQVPCGHVFCSACLQ 10 20 30 40 50 60 60 70 80 90 100 110 ef0396 ECLKPKKPVCGVCRSALAPGVRAVELERQIESTETSCHGCRKNFFLSKIRSHVATCSKYQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|343 ECLKPKKPVCGVCRSALAPGVRAVELERQIESTETSCHGCRKNFFLSKIRSHVATCSKYQ 70 80 90 100 110 120 120 130 140 150 160 170 ef0396 NYIMEGVKATIKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|343 NYIMEGVKATIKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCP 130 140 150 160 170 180 180 190 200 210 220 ef0396 ICASMPWGDPNYRSANFREHIQRRHRFSYDTFVDYDVDEEDMMNQVLQRSIIDQ ::::::::::::::::::::::::::::::.::::::::::::::::::::::: gi|343 ICASMPWGDPNYRSANFREHIQRRHRFSYDAFVDYDVDEEDMMNQVLQRSIIDQ 190 200 210 220 230 >>gi|67971962|dbj|BAE02323.1| unnamed protein product [M (228 aa) initn: 1595 init1: 1595 opt: 1595 Z-score: 1897.6 bits: 358.4 E(): 6.1e-97 Smith-Waterman score: 1595; 98.673% identity (99.558% similar) in 226 aa overlap (1-226:3-228) 10 20 30 40 50 ef0396 AQQRDCGGAAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPK :::.: :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|679 MAAQQQDGGGAAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPK 10 20 30 40 50 60 60 70 80 90 100 110 ef0396 KPVCGVCRSALAPGVRAVELERQIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYIMEG :::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::: gi|679 KPVCGVCRSALAPGVRAMELERQIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYIMEG 70 80 90 100 110 120 120 130 140 150 160 170 ef0396 VKATIKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICASMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|679 VKATIKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICASMP 130 140 150 160 170 180 180 190 200 210 220 ef0396 WGDPNYRSANFREHIQRRHRFSYDTFVDYDVDEEDMMNQVLQRSIIDQ :::::::::::::::::::::::::::::::::::::::::::::::: gi|679 WGDPNYRSANFREHIQRRHRFSYDTFVDYDVDEEDMMNQVLQRSIIDQ 190 200 210 220 >>gi|109091895|ref|XP_001102907.1| PREDICTED: similar to (325 aa) initn: 1595 init1: 1595 opt: 1595 Z-score: 1895.7 bits: 358.5 E(): 7.8e-97 Smith-Waterman score: 1595; 98.673% identity (99.558% similar) in 226 aa overlap (1-226:100-325) 10 20 30 ef0396 AQQRDCGGAAQLAGPAAEADPLGRFTCPVC :::.: :::::::::::::::::::::::: gi|109 SPAPSGREPRPLGLLLIGRRCAAQSGSKMAAQQQDGGGAAQLAGPAAEADPLGRFTCPVC 70 80 90 100 110 120 40 50 60 70 80 90 ef0396 LEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSALAPGVRAVELERQIESTETSCH :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|109 LEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSALAPGVRAMELERQIESTETSCH 130 140 150 160 170 180 100 110 120 130 140 150 ef0396 GCRKNFFLSKIRSHVATCSKYQNYIMEGVKATIKDASLQPRNVPNRYTFPCPYCPEKNFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GCRKNFFLSKIRSHVATCSKYQNYIMEGVKATIKDASLQPRNVPNRYTFPCPYCPEKNFD 190 200 210 220 230 240 160 170 180 190 200 210 ef0396 QEGLVEHCKLFHSTDTKSVVCPICASMPWGDPNYRSANFREHIQRRHRFSYDTFVDYDVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 QEGLVEHCKLFHSTDTKSVVCPICASMPWGDPNYRSANFREHIQRRHRFSYDTFVDYDVD 250 260 270 280 290 300 220 ef0396 EEDMMNQVLQRSIIDQ :::::::::::::::: gi|109 EEDMMNQVLQRSIIDQ 310 320 >>gi|50401716|sp|Q6J1I8.1|RN114_PIG RecName: Full=RING f (228 aa) initn: 1527 init1: 1527 opt: 1527 Z-score: 1817.0 bits: 343.4 E(): 1.9e-92 Smith-Waterman score: 1527; 94.248% identity (97.345% similar) in 226 aa overlap (1-226:3-228) 10 20 30 40 50 ef0396 AQQRDCGGAAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPK :: .: :.::::::::::::::::::::::::::::::::::::::::::::::::: gi|504 MAAQPQDREGGAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPK 10 20 30 40 50 60 60 70 80 90 100 110 ef0396 KPVCGVCRSALAPGVRAVELERQIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYIMEG :::::::::.::::::::::::::::::::::::::::::::::.::::::::::::::: gi|504 KPVCGVCRSTLAPGVRAVELERQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNYIMEG 70 80 90 100 110 120 120 130 140 150 160 170 ef0396 VKATIKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICASMP :::: ::::::::::::::::::::::::::::::::::::: ::::::::::::::::: gi|504 VKATTKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICASMP 130 140 150 160 170 180 180 190 200 210 220 ef0396 WGDPNYRSANFREHIQRRHRFSYDTFVDYDVDEEDMMNQVLQRSIIDQ ::::::::::: :::::::.::::::::::::::::::::::::..:: gi|504 WGDPNYRSANFIEHIQRRHQFSYDTFVDYDVDEEDMMNQVLQRSLLDQ 190 200 210 220 >>gi|73992577|ref|XP_534453.2| PREDICTED: similar to Zin (520 aa) initn: 1521 init1: 1521 opt: 1521 Z-score: 1805.4 bits: 342.5 E(): 8.3e-92 Smith-Waterman score: 1521; 94.248% identity (96.903% similar) in 226 aa overlap (1-226:295-520) 10 20 30 ef0396 AQQRDCGGAAQLAGPAAEADPLGRFTCPVC :::.. : :: ::::::.::::::::::: gi|739 AQTGPRPRPHPLGLLLLGRRCAARRGSKMAAQQQEREGCAQRAGPAAESDPLGRFTCPVC 270 280 290 300 310 320 40 50 60 70 80 90 ef0396 LEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSALAPGVRAVELERQIESTETSCH :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|739 LEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSALAPGVRAAELERQIESTETSCH 330 340 350 360 370 380 100 110 120 130 140 150 ef0396 GCRKNFFLSKIRSHVATCSKYQNYIMEGVKATIKDASLQPRNVPNRYTFPCPYCPEKNFD ::::::::::::.::::::::::::::::::: ::::::::::::::::::::::::::: gi|739 GCRKNFFLSKIRAHVATCSKYQNYIMEGVKATTKDASLQPRNVPNRYTFPCPYCPEKNFD 390 400 410 420 430 440 160 170 180 190 200 210 ef0396 QEGLVEHCKLFHSTDTKSVVCPICASMPWGDPNYRSANFREHIQRRHRFSYDTFVDYDVD :::::::::: :::::::::::::::::::::::::::: :::::::.:::::::::::: gi|739 QEGLVEHCKLCHSTDTKSVVCPICASMPWGDPNYRSANFIEHIQRRHQFSYDTFVDYDVD 450 460 470 480 490 500 220 ef0396 EEDMMNQVLQRSIIDQ :::::::::::::::: gi|739 EEDMMNQVLQRSIIDQ 510 520 >>gi|146231892|gb|ABQ13021.1| zinc finger protein 313 [B (229 aa) initn: 1502 init1: 1502 opt: 1505 Z-score: 1790.9 bits: 338.6 E(): 5.3e-91 Smith-Waterman score: 1505; 93.805% identity (96.460% similar) in 226 aa overlap (1-226:6-229) 10 20 30 40 50 ef0396 AQQRDCGGAAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECL : :: :.:::::::::::::::::::::::::::::::::::::::::::::: gi|146 AAQAQAPARD--GGAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECL 10 20 30 40 50 60 70 80 90 100 110 ef0396 KPKKPVCGVCRSALAPGVRAVELERQIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYI :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|146 KPKKPVCGVCRSALAPGVRAVELERQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNYI 60 70 80 90 100 110 120 130 140 150 160 170 ef0396 MEGVKATIKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICA ::::::: :::: :::.:::::::::::::::::::::::::::: :::::::::::::: gi|146 MEGVKATTKDASRQPRSVPNRYTFPCPYCPEKNFDQEGLVEHCKLSHSTDTKSVVCPICA 120 130 140 150 160 170 180 190 200 210 220 ef0396 SMPWGDPNYRSANFREHIQRRHRFSYDTFVDYDVDEEDMMNQVLQRSIIDQ :::::::::::::: ::.::::.::::::::::::::::.::::::::::: gi|146 SMPWGDPNYRSANFIEHLQRRHQFSYDTFVDYDVDEEDMINQVLQRSIIDQ 180 190 200 210 220 >>gi|73921297|sp|Q4U5R4.1|RN114_BOVIN RecName: Full=RING (230 aa) initn: 1502 init1: 1502 opt: 1505 Z-score: 1790.9 bits: 338.6 E(): 5.3e-91 Smith-Waterman score: 1505; 93.805% identity (96.460% similar) in 226 aa overlap (1-226:7-230) 10 20 30 40 50 ef0396 AQQRDCGGAAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQEC : :: :.::::::::::::::::::::::::::::::::::::::::::::: gi|739 MAAQAQAPARD--GGAQLAGPAAEADPLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQEC 10 20 30 40 50 60 70 80 90 100 110 ef0396 LKPKKPVCGVCRSALAPGVRAVELERQIESTETSCHGCRKNFFLSKIRSHVATCSKYQNY ::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::: gi|739 LKPKKPVCGVCRSALAPGVRAVELERQIESTETSCHGCRKNFFLSKIRAHVATCSKYQNY 60 70 80 90 100 110 120 130 140 150 160 170 ef0396 IMEGVKATIKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPIC :::::::: :::: :::.:::::::::::::::::::::::::::: ::::::::::::: gi|739 IMEGVKATTKDASRQPRSVPNRYTFPCPYCPEKNFDQEGLVEHCKLSHSTDTKSVVCPIC 120 130 140 150 160 170 180 190 200 210 220 ef0396 ASMPWGDPNYRSANFREHIQRRHRFSYDTFVDYDVDEEDMMNQVLQRSIIDQ ::::::::::::::: ::.::::.::::::::::::::::.::::::::::: gi|739 ASMPWGDPNYRSANFIEHLQRRHQFSYDTFVDYDVDEEDMINQVLQRSIIDQ 180 190 200 210 220 230 226 residues in 1 query sequences 3020366983 residues in 8842601 library sequences Tcomplib [34.26] (8 proc) start: Tue May 26 15:35:20 2009 done: Tue May 26 15:39:03 2009 Total Scan time: 854.660 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]