hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090526/iprscan-20090526-15390486/chunk_1/iprscan-20090526-15390486.nocrc
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Query sequence: ef03961
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           33.7    1.9e-11   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           35.5    1.7e-07   1
PF00096.16.ls Zinc finger, C2H2 type                          19.4      0.012   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00097.15.fs   1/1      27    65 ..     1    50 []    33.7  1.9e-11
PF00097.15.ls   1/1      27    65 ..     1    50 []    35.5  1.7e-07

Alignments of top-scoring domains:
PF00097.15.fs: domain 1 of 1, from 27 to 65: score 33.7, E = 1.9e-11
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C++Cle ++ p+       pCgH      fC++Cl+++l+ ++++ C
     ef03961    27    CPVCLEVYEKPV-----QVPCGHV-----FCSACLQECLKPKKPV-C 62   

                   plC<-*
                    +C   
     ef03961    63 GVC    65   

PF00097.15.ls: domain 1 of 1, from 27 to 65: score 35.5, E = 1.7e-07
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C++Cle ++ p+       pCgH      fC++Cl+++l+ ++++ C
     ef03961    27    CPVCLEVYEKPV-----QVPCGHV-----FCSACLQECLKPKKPV-C 62   

                   plC<-*
                    +C   
     ef03961    63 GVC    65   

//