hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-09210493/chunk_1/iprscan-20080808-09210493.nocrc
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Query sequence: ef04018
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF01237.9.fs Oxysterol-binding protein                  159.2    8.4e-45   2
PF01237.9.ls Oxysterol-binding protein                   90.9    3.7e-24   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF01237.9.fs   1/2     135   260 ..     1   130 [.    55.8  9.6e-16
PF01237.9.ls   1/1     135   537 .]     1   440 []    90.9  3.7e-24
PF01237.9.fs   2/2     295   519 ..   141   380 ..   103.4  4.1e-29

Alignments of top-scoring domains:
PF01237.9.fs: domain 1 of 2, from 135 to 260: score 55.8, E = 9.6e-16
                   *->kSqhsSsssltsklkfilsepkdltrRldipeeslspisLwsisqlw
                          s s+  +s++  +  e+k +t  l   e+ +s i+L  isql+
     ef04018   135    ---NSGSELVLSEDEKSDNEDKEETE-LGVMEDQRS-IILHLISQLK 176  

                   vGkdLskitlPvfinEpkSmLqrvtedleYpelLdkAaaredsltrWfly
                    G dL+k  lP+fi+E+ S+L+   + +  p+lL+  +a   + +r ++ 
     ef04018   177 LGMDLTKVVLPTFILEKRSLLEMYADFMAHPDLLLAITAGATPEER-VIC 225  

                   vaastlssysettr..rvkKPlNPlLGEtFelkre<-*
                   ++ ++l  ++e+ ++   kKP NP+ GEtF   +e   
     ef04018   226 FVEYYLTAFHEGRKgaLAKKPYNPIIGETFHCSWE    260  

PF01237.9.ls: domain 1 of 1, from 135 to 537: score 90.9, E = 3.7e-24
                   *->kSqhsSsssltsklkfilsepkdltrRldipeeslspisLwsisqlw
                          s s+  +s++  +  e+k +t  l   e+ +s i+L  isql+
     ef04018   135    ---NSGSELVLSEDEKSDNEDKEETE-LGVMEDQRS-IILHLISQLK 176  

                   vGkdLskitlPvfinEpkSmLqrvtedleYpelLdkAaaredsltrWfly
                    G dL+k  lP+fi+E+ S+L+   + +  p+lL+  +a   + +r ++ 
     ef04018   177 LGMDLTKVVLPTFILEKRSLLEMYADFMAHPDLLLAITAGATPEER-VIC 225  

                   vaastlssysettr..rvkKPlNPlLGEtFelkren..............
                   ++ ++l  ++e+ ++   kKP NP+ GEtF   +e ++++ +++++ +++
     ef04018   226 FVEYYLTAFHEGRKgaLAKKPYNPIIGETFHCSWEVpkdrvkpkrtasrs 275  

                   ....dElpnkg......qyrllsEQVSHHPPvsAffaespkskwrvqgev
                   + +  E+p   +++++   r+ +EQVSHHPP+s f+ e ++    v   v
     ef04018   276 pascHEHPMADdpsksyKLRFVAEQVSHHPPISCFYCECEEKRLCVNTHV 325  

                   qikskFlGkslavmkeGltvhtildikdingkpEtYtwtqPnttveGILv
                     kskF G s  v + G    + l  ++     E Y+ t P  +++ IL 
     ef04018   326 WTKSKFMGMSVGVSMIGE-GVLRLLEHG-----EEYVFTLPSAYARSILT 369  

                   GkpfvElSGdesvin.sstGdkcvIeFktkGyfSGkkdsfkgrivkdpdg
                     p+vEl G++  in  +tG+ +   F tk +  Gk+ ++ ++++  p  
     ef04018   370 -IPWVEL-GGKVSINcAKTGYSATVIFHTKPFYGGKVHRVTAEVKHNPTN 417  

                   nkdKEkklytlsGkWndsmyikKvqsksegelflDahktphealkvrpLe
                               G Wn+  +    +     +   D+   p    k rpLe
     ef04018   418 -----TIVCKAHGEWNGTLEFTYNNG---ETKVIDTTTLPVYPKKIRPLE 459  

                   eqhelesrkaWkkvadalkvgnltvftktkneleerqRpllkptesrgve
                    q++ esr++W  v++ l+ g++ ++t+ k  lee+qR   +++e+ + +
     ef04018   460 KQGPMESRNLWREVTRYLRLGDIDAATEQKRHLEEKQRVEERKRENLRTP 509  

                   dqralfkrledkedldkeekkekpeaddkerkqkgslyepkwfvpsgqpv
                   + +++f +++                       +g l +    ++     
     ef04018   510 WKPKYFIQEVTL------------------PPVIGPLPRRELVLR----- 536  

                   tdKeklyikarkeyWefrKk<-*
                   +                      
     ef04018   537 G-------------------    537  

PF01237.9.fs: domain 2 of 2, from 295 to 519: score 103.4, E = 4.1e-29
                   *->rllsEQVSHHPPvsAffaespkskwrvqgevqikskFlGkslavmke
                      r+ +EQVSHHPP+s f+ e ++    v   v  kskF G s  v + 
     ef04018   295    RFVAEQVSHHPPISCFYCECEEKRLCVNTHVWTKSKFMGMSVGVSMI 341  

                   GltvhtildikdingkpEtYtwtqPnttveGILvGkpfvElSGdesvin.
                   G    + l  ++     E Y+ t P  +++ IL   p+vEl G++  in 
     ef04018   342 GE-GVLRLLEHG-----EEYVFTLPSAYARSILT-IPWVEL-GGKVSINc 383  

                   sstGdkcvIeFktkGyfSGkkdsfkgrivkdpdgnkdKEkklytlsGkWn
                    +tG+ +   F tk +  Gk+ ++ ++++  p              G Wn
     ef04018   384 AKTGYSATVIFHTKPFYGGKVHRVTAEVKHNPTN-----TIVCKAHGEWN 428  

                   dsmyikKvqsksegelflDahktphealkvrpLeeqhelesrkaWkkvad
                   +  +    +     +   D+   p    k rpLe q++ esr++W  v++
     ef04018   429 GTLEFTYNNG---ETKVIDTTTLPVYPKKIRPLEKQGPMESRNLWREVTR 475  

                   alkvgnltvftktkneleerqRpllkptesrgvedqralfkrle<-*
                    l+ g++ ++t+ k  lee+qR   +++e+ + ++ +++f +++   
     ef04018   476 YLRLGDIDAATEQKRHLEEKQRVEERKRENLRTPWKPKYFIQEV    519  

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