hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-09271423/chunk_1/iprscan-20080808-09271423.nocrc
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Query sequence: ef04086
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                  42.0    7.9e-08   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/2     183   223 ..     1    46 []    23.8    0.023
SM00320    2/2     226   267 ..     1    46 []    18.2     0.65

Alignments of top-scoring domains:
SM00320: domain 1 of 2, from 183 to 223: score 23.8, E = 0.023
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.Dgt.irl
                      t k+   +++H+g    +++a +  g      +++a++s+ gt ir+
     ef04086   183    TeKPPVDIPAHEG--VLSCIALNLQG------TRIATASeKGTlIRI 221  

                   Wd<-*
                   +d   
     ef04086   222 FD    223  

SM00320: domain 2 of 2, from 226 to 267: score 18.2, E = 0.65
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                      ++ l+++l++g ++ + ++++ f++d       +l++++s+ gt+++
     ef04086   226    SgHLIQELRrGSQA-ANIYCINFNQDA------SLICVSSdHGTVHI 265  

                   Wd<-*
                   +    
     ef04086   266 FA    267  

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