hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-09395355/chunk_1/iprscan-20080808-09395355.nocrc
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Query sequence: ef04216
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07719.7.ls Tetratricopeptide repeat                        75.6    1.4e-19   8
PF07719.7.fs Tetratricopeptide repeat                        70.3    1.2e-18  10
PF00515.18.fs Tetratricopeptide repeat                        51.0    1.6e-13   7
PF00515.18.ls Tetratricopeptide repeat                        49.9    8.1e-12   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00515.18.ls   2/4     202   235 ..     1    34 []     7.9     0.57
PF07719.7.fs   3/10    236   269 ..     1    34 []    25.5  4.2e-06
PF00515.18.fs   3/7     236   269 ..     1    34 []    25.2  3.5e-06
PF07719.7.ls   3/8     236   269 ..     1    34 []    27.5  4.5e-05
PF00515.18.ls   3/4     236   269 ..     1    34 []    27.2  5.2e-05
PF00515.18.ls   4/4     801   834 ..     1    34 []    13.5     0.12
PF00515.18.fs   7/7     802   830 ..     2    30 ..    16.0   0.0015

Alignments of top-scoring domains:
PF00515.18.ls: domain 2 of 4, from 202 to 235: score 7.9, E = 0.57
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      +e +  l+++y+ +g+ ++ +++   A  l+P++   
     ef04216   202    YEPFSTLAMIYEDQGDMEKSLQFELIAAHLNPSD    235  

PF07719.7.fs: domain 3 of 10, from 236 to 269: score 25.5, E = 4.2e-06
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                       e + +l++  +++ + ++A+ +y kAl+++P+n   
     ef04216   236    TEEWVRLAEMSLEQDNIKQAIFCYTKALKYEPTN    269  

PF00515.18.fs: domain 3 of 7, from 236 to 269: score 25.2, E = 3.5e-06
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                       e + +l+   l++ + ++Ai +y+kAL+ +P+n   
     ef04216   236    TEEWVRLAEMSLEQDNIKQAIFCYTKALKYEPTN    269  

PF07719.7.ls: domain 3 of 8, from 236 to 269: score 27.5, E = 4.5e-05
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                       e + +l++  +++ + ++A+ +y kAl+++P+n   
     ef04216   236    TEEWVRLAEMSLEQDNIKQAIFCYTKALKYEPTN    269  

PF00515.18.ls: domain 3 of 4, from 236 to 269: score 27.2, E = 5.2e-05
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                       e + +l+   l++ + ++Ai +y+kAL+ +P+n   
     ef04216   236    TEEWVRLAEMSLEQDNIKQAIFCYTKALKYEPTN    269  

PF00515.18.ls: domain 4 of 4, from 801 to 834: score 13.5, E = 0.12
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                       e +ynlG  +++lg    Ai +y+kALel P     
     ef04216   801    QESFYNLGRGLHQLGLIHLAIHYYQKALELPPLV    834  

PF00515.18.fs: domain 7 of 7, from 802 to 830: score 16.0, E = 0.0015
                   *->eayynlGnaylklgkydeAieayekALel<-*
                      e +ynlG  +++lg    Ai +y+kALel   
     ef04216   802    ESFYNLGRGLHQLGLIHLAIHYYQKALEL    830  

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