hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-09395355/chunk_1/iprscan-20080808-09395355.nocrc
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Query sequence: ef04216
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00028                                                  68.6    7.6e-16   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00028    1/5     168   201 ..     1    34 []     2.9  2.3e+02
SM00028    2/5     202   235 ..     1    34 []    10.6       31
SM00028    3/5     236   269 ..     1    34 []    29.1   0.0006
SM00028    4/5     270   303 ..     1    34 []     6.8       84
SM00028    5/5     801   834 ..     1    34 []    19.1     0.62

Alignments of top-scoring domains:
SM00028: domain 1 of 5, from 168 to 201: score 2.9, E = 2.3e+02
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                       + l   +n+ +++g+ +eAi  + + ++ +P     
     ef04216   168    LRGLMGEANIRFARGEREEAILMCMEIIRQAPLA    201  

SM00028: domain 2 of 5, from 202 to 235: score 10.6, E = 31
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      +e ++ l+++y+ +gd ++ +++   A  l+P++   
     ef04216   202    YEPFSTLAMIYEDQGDMEKSLQFELIAAHLNPSD    235  

SM00028: domain 3 of 5, from 236 to 269: score 29.1, E = 0.0006
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                       e + +l+++ l + ++++Ai +y+kAL+ +P+n   
     ef04216   236    TEEWVRLAEMSLEQDNIKQAIFCYTKALKYEPTN    269  

SM00028: domain 4 of 5, from 270 to 303: score 6.8, E = 84
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      +++l  +  +y+++gd+++A++ y++ L l       
     ef04216   270    VRYLWERSSLYEQMGDHKMAMDGYRRILNLLSPS    303  

SM00028: domain 5 of 5, from 801 to 834: score 19.1, E = 0.62
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                       e +ynlG  +++lg +  Ai yy+kALel P     
     ef04216   801    QESFYNLGRGLHQLGLIHLAIHYYQKALELPPLV    834  

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