hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-09531972/chunk_1/iprscan-20080808-09531972.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ef04295 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00069.15.ls Protein kinase domain 300.2 3.6e-87 1 PF00069.15.fs Protein kinase domain 298.3 1.3e-86 1 PF00659.9.fs POLO box duplicated region 112.5 1.1e-31 2 PF00659.9.ls POLO box duplicated region 112.4 1.3e-30 2 PF07714.7.fs Protein tyrosine kinase 84.3 2.3e-24 1 PF07714.7.ls Protein tyrosine kinase 86.1 9.9e-23 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00069.15.fs 1/1 37 289 .. 1 287 [] 298.3 1.3e-86 PF07714.7.fs 1/1 37 289 .. 1 272 [] 84.3 2.3e-24 PF00069.15.ls 1/1 37 289 .. 1 287 [] 300.2 3.6e-87 PF07714.7.ls 1/1 37 289 .. 1 272 [] 86.1 9.9e-23 PF00659.9.fs 1/2 445 481 .. 1 40 [. 44.3 4.6e-12 PF00659.9.ls 1/2 445 508 .. 1 76 [] 42.2 1.7e-09 PF00659.9.ls 2/2 542 612 .. 1 76 [] 70.2 6.2e-18 PF00659.9.fs 2/2 542 612 .. 1 76 [] 68.2 5.9e-19 Alignments of top-scoring domains: PF00069.15.fs: domain 1 of 1, from 37 to 289: score 298.3, E = 1.3e-86 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr y +++ lG+G+f+++y+a++ tg +AvK+i+ ++ + ++++++ ef04295 37 YLKGRLLGKGGFARCYEATDTETGSAYAVKVIPQSRVAKPHQREKIL 83 lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse + Ei++++ L+H +Ivr+ + fed d++y+ lE+c +L ++ + ef04295 84 N-EIELHRDLQHRHIVRFSHHFEDADNIYIFLELCSRK----SLAHIWK- 127 trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv r++ l e e++ +++Qil+gl+YLH++gi+HRDLK+ N+++ +n++ ef04295 128 -ARHTLL---EPEVRYYLRQILSGLKYLHQRGILHRDLKLGNFFITENME 173 vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkvD + K++DFGlA+ l +++ ++ +t++GTp+Y+APEvll ++g+g+++D ef04295 174 L----KVGDFGLAARL-EpPEQrKKTICGTPNYVAPEVLL-RQGHGPEAD 217 vWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspewdsi vWSlG+++y ll+G pPF + d ++ +r i++ +++ p + s ef04295 218 VWSLGCVMYTLLCGSPPFETA-----DLKETYRCIKQ--VHYTLPASLS- 259 srsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* +a++L+ +L+ P +R+++++il H++f ef04295 260 ------------LPARQLLAAILRASPRDRPSIDQILRHDFF 289 PF07714.7.fs: domain 1 of 1, from 37 to 289: score 84.3, E = 2.3e-24 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLke.igaseeei +g+ LG+G F + y++t + +t+ AVK+++++ a +++ ef04295 37 YLKGRLLGKGGFARCYEATDT----ETGSAYAVKVIPQsRVAKPHQ- 78 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd re+ l+E+++ + l +H +iVr+ + + +yi +E++ + ef04295 79 -REKILNEIELHRDL-QHRHIVRFSHHFED-ADN----IYIFLELCSRKS 121 LldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLV L + ++ ++ L ++ + +Qi +G+ YL+++++ HRDL N + ef04295 122 LAHIWKA---RHTLLEPEVRYYLRQILSGLKYLHQRGILHRDLKLGNFFI 168 senlvVKIsDFGLaRdiynddyY.vrkkgggk.lPvkWmAPEslkygkFt +en+ K++DFGLa + + +++++ APE+l ef04295 169 TENMELKVGDFGLAARL-----EpPEQRKKTIcGTPNYVAPEVLLRQGHG 213 skSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPenCP + DVWS G++++ ++ G +P ++ + e++ + + y Lp+ + ef04295 214 PEADVWSLGCVMYTLLC-GSPP-FETADLKETYRCIKQVHYTLPASL--S 259 delYdlMlqCWaedPedRPtFsel..veeL<-* +l+ ++ P dRP+ ++ ++ ++ ef04295 260 LPARQLLAAILRASPRDRPSIDQIlrHDFF 289 PF00069.15.ls: domain 1 of 1, from 37 to 289: score 300.2, E = 3.6e-87 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr y +++ lG+G+f+++y+a++ tg +AvK+i+ ++ + ++++++ ef04295 37 YLKGRLLGKGGFARCYEATDTETGSAYAVKVIPQSRVAKPHQREKIL 83 lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse + Ei++++ L+H +Ivr+ + fed d++y+ lE+c +L ++ + ef04295 84 N-EIELHRDLQHRHIVRFSHHFEDADNIYIFLELCSRK----SLAHIWK- 127 trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv r++ l e e++ +++Qil+gl+YLH++gi+HRDLK+ N+++ +n++ ef04295 128 -ARHTLL---EPEVRYYLRQILSGLKYLHQRGILHRDLKLGNFFITENME 173 vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkvD + K++DFGlA+ l +++ ++ +t++GTp+Y+APEvll ++g+g+++D ef04295 174 L----KVGDFGLAARL-EpPEQrKKTICGTPNYVAPEVLL-RQGHGPEAD 217 vWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspewdsi vWSlG+++y ll+G pPF + d ++ +r i++ +++ p + s ef04295 218 VWSLGCVMYTLLCGSPPFETA-----DLKETYRCIKQ--VHYTLPASLS- 259 srsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* +a++L+ +L+ P +R+++++il H++f ef04295 260 ------------LPARQLLAAILRASPRDRPSIDQILRHDFF 289 PF07714.7.ls: domain 1 of 1, from 37 to 289: score 86.1, E = 9.9e-23 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLke.igaseeei +g+ LG+G F + y++t + +t+ AVK+++++ a +++ ef04295 37 YLKGRLLGKGGFARCYEATDT----ETGSAYAVKVIPQsRVAKPHQ- 78 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd re+ l+E+++ + l +H +iVr+ + + +yi +E++ + ef04295 79 -REKILNEIELHRDL-QHRHIVRFSHHFED-ADN----IYIFLELCSRKS 121 LldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLV L + ++ ++ L ++ + +Qi +G+ YL+++++ HRDL N + ef04295 122 LAHIWKA---RHTLLEPEVRYYLRQILSGLKYLHQRGILHRDLKLGNFFI 168 senlvVKIsDFGLaRdiynddyY.vrkkgggk.lPvkWmAPEslkygkFt +en+ K++DFGLa + + +++++ APE+l ef04295 169 TENMELKVGDFGLAARL-----EpPEQRKKTIcGTPNYVAPEVLLRQGHG 213 skSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPenCP + DVWS G++++ ++ G +P ++ + e++ + + y Lp+ + ef04295 214 PEADVWSLGCVMYTLLC-GSPP-FETADLKETYRCIKQVHYTLPASL--S 259 delYdlMlqCWaedPedRPtFsel..veeL<-* +l+ ++ P dRP+ ++ ++ ++ ef04295 260 LPARQLLAAILRASPRDRPSIDQIlrHDFF 289 PF00659.9.fs: domain 1 of 2, from 445 to 481: score 44.3, E = 4.6e-12 *->ysnKyglgyqLSDgsvgVnFFnDhtklillpdgeeYLvtY<-* ysnK g+gyqLS v V+ FnD+t+++l+++ ++ v+Y ef04295 445 YSNKFGFGYQLSSRRVAVL-FNDGTHMALSANRKT--VHY 481 PF00659.9.ls: domain 1 of 2, from 445 to 508: score 42.2, E = 1.7e-09 *->ysnKyglgyqLSDgsvgVnFFnDhtklillpdgeeYLvtYidedrdr ysnK g+gyqLS v V+ FnD+t+++l+++ ++ v+Y + + ef04295 445 YSNKFGFGYQLSSRRVAVL-FNDGTHMALSANRKT--VHYNPTS--T 486 etyplstlLKYGemsgvpesLrskltllk<-* ++ +s +vp+ L +l l+ ef04295 487 KHFSFSVG-------AVPRALQPQLGILR 508 PF00659.9.ls: domain 2 of 2, from 542 to 612: score 70.2, E = 6.2e-18 *->ysnKyglgyqLSDgsvgVnFFnDhtklillpdgeeYLvtYidedrdr +++++l + +SDg+v+VnF+ Dhtklil+ + Lvt+ ++ r ef04295 542 VKTDQALLMLFSDGTVQVNFYGDHTKLILSGWEPL-LVTFVARNRSA 587 etyplstlLKYGemsgvpesLrskltllk<-* +ty++s+l g++ +Lr++l+++ ef04295 588 CTYLASHL----RQLGCSPDLRQRLRYAL 612 PF00659.9.fs: domain 2 of 2, from 542 to 612: score 68.2, E = 5.9e-19 *->ysnKyglgyqLSDgsvgVnFFnDhtklillpdgeeYLvtYidedrdr +++++l + +SDg+v+VnF+ Dhtklil+ + Lvt+ ++ r ef04295 542 VKTDQALLMLFSDGTVQVNFYGDHTKLILSGWEPL-LVTFVARNRSA 587 etyplstlLKYGemsgvpesLrskltllk<-* +ty++s+l g++ +Lr++l+++ ef04295 588 CTYLASHL----RQLGCSPDLRQRLRYAL 612 //