hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-09531972/chunk_1/iprscan-20080808-09531972.nocrc
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Query sequence: ef04295
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 338.5    4.5e-97   1
SM00219                                                  36.3    2.2e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      37   289 ..     1   280 []    36.3  2.2e-13
SM00220    1/1      37   289 ..     1   231 []   338.5  4.5e-97

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 37 to 289: score 36.3, E = 2.2e-13
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda......keeFl
                        +g+ LG G F + y++t ++++   AVK++  +   +++++e +l
     ef04295    37    YLKGRLLGKGGFARCYEATDTetgSAYAVKVIPQSRvakphqREKIL 83   

                   rEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLld
                   +E+++ + l  +H +iV++     +        + ++i +E+++  +L +
     ef04295    84 NEIELHRDL--QHRHIVRFSHHFEDA-------DNIYIFLELCSRKSLAH 124  

                   yLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkv
                      k r++l  ++  ++  QI +G  YL+++++ HRDL   N  ++en  
     ef04295   125 IW-KARHTLLEPEVRYYLRQILSGLKYLHQRGILHRDLKLGNFFITENME 173  

                   vKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkdg
                    K++DFGL+  l+            rkk+  +g         APE+l   
     ef04295   174 LKVGDFGLAARLEPP--------EQRKKT-ICGTP----NYVAPEVLLRQ 210  

                   kFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRlp
                      ++ DVWS G +++  +  G +P +       + +e ++++k+ ++  
     ef04295   211 GHGPEADVWSLGCVMY-TLLCGSPPFET-----ADLKETYRCIKQVHYTL 254  

                   kPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel..verl<-*
                   +            +    +l     ++ P dRP+  ++ +++++   
     ef04295   255 PASL---------SLPARQLLAAILRASPRDRPSIDQIlrHDFF    289  

SM00220: domain 1 of 1, from 37 to 289: score 338.5, E = 4.5e-97
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik..........eril
                      Y ++++lGkG+F+++y a+d++tg  +A+Kvi++++  +++++e+il
     ef04295    37    YLKGRLLGKGGFARCYEATDTETGSAYAVKVIPqsrvakphqrEKIL 83   

                   rEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgr
                   +Ei++++  +H +IV++  +fed d++y+++E+c+    +L ++ k r +
     ef04295    84 NEIELHRDlQHRHIVRFSHHFEDaDNIYIFLELCSR--KSLAHIWKARHT 131  

                   rglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvK
                         l E+e+r+y+rQils+L+YLH++gI+HRDLK  N +++++ ++K
     ef04295   132 ------LLEpEVRYYLRQILSGLKYLHQRGILHRDLKLGNFFITEnmELK 175  

                   laDFGlArql.......ttfvGTpeYmAPEvl...gYgkpavDiWSlGci
                   ++DFGlA++l++++++++t++GTp+Y+APEvl ++g+g+ ++D+WSlGc+
     ef04295   176 VGDFGLAARLeppeqrkKTICGTPNYVAPEVLlrqGHGP-EADVWSLGCV 224  

                   lyElltGkpPFp..qldlifkkig..........SpeakdLikklLvkdP
                   +y ll+G pPF++ +l+++++ i+  +++ + + S +a++L+  +L+  P
     ef04295   225 MYTLLCGSPPFEtaDLKETYRCIKqvhytlpaslSLPARQLLAAILRASP 274  

                   ekRlta.eaLedeldikaHPff<-*
                   ++R++++++L+       H ff   
     ef04295   275 RDRPSIdQILR-------HDFF    289  

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