hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-10055103/chunk_1/iprscan-20080808-10055103.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ef04341
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00324                                                 186.0    3.7e-51   1
SM00109                                                  33.7    2.4e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00109    1/1     290   338 ..     1    61 []    33.7  2.4e-05
SM00324    1/1     363   539 ..     1   193 []   186.0  3.7e-51

Alignments of top-scoring domains:
SM00109: domain 1 of 1, from 290 to 338: score 33.7, E = 2.4e-05
                   *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC
                      H+fv +t+ kp  C  C+k+i+++        +l+C++C+v+ H  C
     ef04341   290    HDFVSKTViKPESCVPCGKRIKFGKL------SLKCRDCRVVSHPEC 330  

                   aekvpaqshksglsC<-*
                    ++ p+       +C   
     ef04341   331 RDRCPL-------PC    338  

SM00324: domain 1 of 1, from 363 to 539: score 186.0, E = 3.7e-51
                   *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged.
                      ++iP+iv++C++++e+rGl++ G+YR+sG   +vkeL+e+f + +  
     ef04341   363    PMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTv 409  

                   dldsldesiteesedleey.dvhdvAglLKlyLReLPePLltfelyeefi
                                 +l++ +d+h++++lLK +LR+L ePLltf+l + f+
     ef04341   410 P-------------LLSKVdDIHAICSLLKDFLRNLKEPLLTFRLNRAFM 446  

                   eaaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.H
                   eaa++               de+  + a+++++ +LP+anr+tL +L+ H
     ef04341   447 EAAEI--------------TDEDNSIAAMYQAVGELPQANRDTLAFLMiH 482  

                   LnrVaehsevNkMtarNLAivFgPtLlrpp.........ltdikhqnkvv
                   L+rVa +s+++kM++ NLA+vFgPt+  +  +++++ + l+dik q kvv
     ef04341   483 LQRVA-QSPHTKMDVANLAKVFGPTIVAHAvpnpdpvtmLQDIKRQPKVV 531  

                   etlienad<-*
                   e l+  ++   
     ef04341   532 ERLLSLPL    539  

//