hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-10123030/chunk_1/iprscan-20080808-10123030.nocrc
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Query sequence: ef04346
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00178.13.ls Ets-domain                                     219.3      8e-63   1
PF00178.13.fs Ets-domain                                     217.4      3e-62   1
PF02198.7.fs Sterile alpha motif (SAM)/Pointed domain       153.6    8.2e-46   1
PF02198.7.ls Sterile alpha motif (SAM)/Pointed domain       155.5    1.3e-43   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02198.7.fs   1/1     140   224 ..     1    91 []   153.6  8.2e-46
PF02198.7.ls   1/1     140   224 ..     1    91 []   155.5  1.3e-43
PF00178.13.fs   1/1     306   389 ..     1    89 []   217.4    3e-62
PF00178.13.ls   1/1     306   389 ..     1    89 []   219.3    8e-63

Alignments of top-scoring domains:
PF02198.7.fs: domain 1 of 1, from 140 to 224: score 153.6, E = 8.2e-46
                   *->pssfkkeqkrlgipadlRtdPrlWtedhVleWLewavkenkfsLepi
                      p++++++++r+ +pa    dP+lWt++hV++WLewa+ke  +sL++i
     ef04346   140    PPNMTTNERRVIVPA----DPTLWTQEHVRQWLEWAIKE--YSLMEI 180  

                   dfskFadmsGkeLCslskedFleraPlfvGdiLwehLqiLrkas<-*
                   d+s+F++m+GkeLC+++kedFl++++l+++++L +hL +Lr++s   
     ef04346   181 DTSFFQNMDGKELCKMNKEDFLRATTLYNTEVLLSHLSYLRESS    224  

PF02198.7.ls: domain 1 of 1, from 140 to 224: score 155.5, E = 1.3e-43
                   *->pssfkkeqkrlgipadlRtdPrlWtedhVleWLewavkenkfsLepi
                      p++++++++r+ +pa    dP+lWt++hV++WLewa+ke  +sL++i
     ef04346   140    PPNMTTNERRVIVPA----DPTLWTQEHVRQWLEWAIKE--YSLMEI 180  

                   dfskFadmsGkeLCslskedFleraPlfvGdiLwehLqiLrkas<-*
                   d+s+F++m+GkeLC+++kedFl++++l+++++L +hL +Lr++s   
     ef04346   181 DTSFFQNMDGKELCKMNKEDFLRATTLYNTEVLLSHLSYLRESS    224  

PF00178.13.fs: domain 1 of 1, from 306 to 389: score 217.4, E = 3e-62
                   *->qiqLWQFLleLLtdrqdnsdfIrWtgrdkGeFKlvSKDpeeVARLWG
                      qiqLWQFLleLL+d + n ++I+W+g ++GeFK++  Dp+eVAR+WG
     ef04346   306    QIQLWQFLLELLSD-SANASCITWEG-TNGEFKMT--DPDEVARRWG 348  

                   erKNNkpnMNYdKLSRALRYYYkknIirKvkGkRlvYkFvse<-*
                   erK  kpnMNYdKLSRALRYYY+knI++Kv+GkR++YkF+++   
     ef04346   349 ERKS-KPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFH    389  

PF00178.13.ls: domain 1 of 1, from 306 to 389: score 219.3, E = 8e-63
                   *->qiqLWQFLleLLtdrqdnsdfIrWtgrdkGeFKlvSKDpeeVARLWG
                      qiqLWQFLleLL+d + n ++I+W+g ++GeFK++  Dp+eVAR+WG
     ef04346   306    QIQLWQFLLELLSD-SANASCITWEG-TNGEFKMT--DPDEVARRWG 348  

                   erKNNkpnMNYdKLSRALRYYYkknIirKvkGkRlvYkFvse<-*
                   erK  kpnMNYdKLSRALRYYY+knI++Kv+GkR++YkF+++   
     ef04346   349 ERKS-KPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFH    389  

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