hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-10123030/chunk_1/iprscan-20080808-10123030.nocrc
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Query sequence: ef04346
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00413                                                 207.3    1.4e-57   1
SM00251                                                 153.0    3.1e-41   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00251    1/1     140   224 ..     1    90 []   153.0  3.1e-41
SM00413    1/1     306   391 ..     1    90 []   207.3  1.4e-57

Alignments of top-scoring domains:
SM00251: domain 1 of 1, from 140 to 224: score 153.0, E = 3.1e-41
                   *->pssfkkeqkrlgipadlRtdPrlWtedhVleWLewavkenkfsLepi
                      p++++++++r+ +pa    dP+lWt++hV++WLewa+ke  +sL++i
     ef04346   140    PPNMTTNERRVIVPA----DPTLWTQEHVRQWLEWAIKE--YSLMEI 180  

                   dfskF.dmsGkeLCslskedFleraPlfvGdiLwehLqiLrkas<-*
                   d+s+F++m+GkeLC+++kedFl++++l+++++L +hL +Lr++s   
     ef04346   181 DTSFFqNMDGKELCKMNKEDFLRATTLYNTEVLLSHLSYLRESS    224  

SM00413: domain 1 of 1, from 306 to 391: score 207.3, E = 1.4e-57
                   *->qiqLWqFLleLLldpennsdiIrWtdrsgGeFklvdpeeEVARLWGq
                      qiqLWqFLleLL+d++n +++I W++ +g eFk++dp+e VAR+WG+
     ef04346   306    QIQLWQFLLELLSDSAN-ASCITWEGTNG-EFKMTDPDE-VARRWGE 349  

                   rKgNkpnMNYeKLSRALRyYYkknIlrKVeGkrlvYkFvkdpl<-*
                   rK  kpnMNY+KLSRALRyYY+knI++KV+Gkr++YkF+++     
     ef04346   350 RK-SKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGI    391  

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