hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-10392433/chunk_1/iprscan-20080808-10392433.nocrc
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Query sequence: ef04929
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00008.17.fs EGF-like domain                                 68.9    1.9e-18   3
PF00008.17.ls EGF-like domain                                 69.4    1.1e-17   3
PF07645.6.fs Calcium binding EGF domain                      58.9    3.8e-17   3
PF07645.6.ls Calcium binding EGF domain                      46.0    1.1e-10   1
PF07974.3.ls EGF-like domain                                 21.8     0.0023   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00008.17.fs   1/3    1097  1130 ..     1    38 []    37.7  1.2e-09
PF00008.17.ls   1/3    1097  1130 ..     1    38 []    39.5  1.1e-08
PF07974.3.ls   1/1    1097  1130 ..     1    37 []    21.8   0.0023
PF07645.6.ls   1/1    1133  1170 ..     1    55 []    46.0  1.1e-10
PF07645.6.fs   2/3    1133  1170 ..     1    55 []    44.4    1e-12
PF00008.17.ls   2/3    1137  1170 ..     1    38 []    22.3   0.0016

Alignments of top-scoring domains:
PF00008.17.fs: domain 1 of 3, from 1097 to 1130: score 37.7, E = 1.2e-09
                   *->CspnngpCsngGtCvdtp..ggytCeCppGyfllytGkrC<-*
                      C+ n  pC+++G+Cv   ++ gy+C+Cpp     ++G++C   
     ef04929  1097    CAVN--PCLHNGECVADNtsRGYHCRCPPS----WQGDDC    1130 

PF00008.17.ls: domain 1 of 3, from 1097 to 1130: score 39.5, E = 1.1e-08
                   *->CspnngpCsngGtCvdtp..ggytCeCppGyfllytGkrC<-*
                      C+ n  pC+++G+Cv   ++ gy+C+Cpp     ++G++C   
     ef04929  1097    CAVN--PCLHNGECVADNtsRGYHCRCPPS----WQGDDC    1130 

PF07974.3.ls: domain 1 of 1, from 1097 to 1130: score 21.8, E = 0.0023
                   *->C....CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-*
                      C  ++C   +G Cv +n  s+   +C C+++    +qG+dC   
     ef04929  1097    CavnpCLH-NGECVADNT-SR-GYHCRCPPS----WQGDDC    1130 

PF07645.6.ls: domain 1 of 1, from 1133 to 1170: score 46.0, E = 1.1e-10
                   *->DvDECadgtlhnCdDpdantvCvNtiGSFeCvarkdCpeGYeVpvse
                      Dv+EC +   + C   + ++ C+Nt+GSF C     Cp GY+     
     ef04929  1133    DVNECLS---NPC---PSTAMCNNTQGSFICK----CPVGYQ----- 1164 

                   nnedgtnC<-*
                      + + C   
     ef04929  1165 --LEKGIC    1170 

PF07645.6.fs: domain 2 of 3, from 1133 to 1170: score 44.4, E = 1e-12
                   *->DvDECadgtlhnCdDpdantvCvNtiGSFeCvarkdCpeGYeVpvse
                      Dv+EC +   + C   + ++ C+Nt+GSF C     Cp GY+     
     ef04929  1133    DVNECLS---NPC---PSTAMCNNTQGSFICK----CPVGYQ----- 1164 

                   nnedgtnC<-*
                      + + C   
     ef04929  1165 --LEKGIC    1170 

PF00008.17.ls: domain 2 of 3, from 1137 to 1170: score 22.3, E = 0.0016
                   *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-*
                      C +n  pC   + C++t+g++ C+Cp+G  ++     C   
     ef04929  1137    CLSN--PCPSTAMCNNTQGSFICKCPVG--YQLEKGIC    1170 

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