hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-10392433/chunk_1/iprscan-20080808-10392433.nocrc
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Query sequence: ef04929
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00181                                                  68.0    1.2e-15   3
SM00179                                                  57.5    1.8e-12   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00179    1/2    1093  1131 ..     1    34 []    12.8    0.043
SM00181    1/3    1096  1131 ..     1    32 []    35.4  7.8e-06
SM00179    2/2    1133  1171 ..     1    34 []    44.6  1.3e-08
SM00181    2/3    1136  1171 ..     1    32 []    27.3   0.0021
SM00181    3/3    1291  1339 ..     1    32 []     5.3       86

Alignments of top-scoring domains:
SM00179: domain 1 of 2, from 1093 to 1131: score 12.8, E = 0.043
                   *->DiDEC...pCqnGGptgtCi..N.vGSYrC.CppGyt.rnCe<-*
                       ++ C  +pC ++G    C+ +N+  +Y+C+Cpp +++  C    
     ef04929  1093    SVNSCavnPCLHNG---ECVadNtSRGYHCrCPPSWQgDDCS    1131 

SM00181: domain 1 of 3, from 1096 to 1131: score 35.4, E = 7.8e-06
                   *->eCa..pCsnGgtEqnGtCi......sytC.CpgpGytg.rCe<-*
                       Ca +pC ++     G+C+ ++++++y+C+Cp p ++g+ C    
     ef04929  1096    SCAvnPCLHN-----GECVadntsrGYHCrCP-PSWQGdDCS    1131 

SM00179: domain 2 of 2, from 1133 to 1171: score 44.6, E = 1.3e-08
                   *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt...rnCe<-*
                      D++EC ++pC+  +    C N+ GS+ C+Cp Gy+  ++ C    
     ef04929  1133    DVNEClsnPCPSTA---MCNNtQGSFICkCPVGYQlekGICN    1171 

SM00181: domain 2 of 3, from 1136 to 1171: score 27.3, E = 0.0021
                   *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg...rCe<-*
                      eC+++pC        + C ++ +s+ C+Cp  Gy+++++ C    
     ef04929  1136    ECLsnPCPST-----AMCNntqgSFICkCP-VGYQLekgICN    1171 

SM00181: domain 3 of 3, from 1291 to 1339: score 5.3, E = 86
                   *->eCa.............pCsnGgtEqnGtCi.........sytC..Cp
                      eC+++++  ++ ++   C+         C ++    ++  ++C+ C 
     ef04929  1291    ECDkdtsictdldgvaLCQ---------CKsgyfqfnkmDHSCraCE 1328 

                   gpGytg...rCe<-*
                    +Gy++++++C    
     ef04929  1329 -DGYRLeneTCM    1339 

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