hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-11000593/chunk_1/iprscan-20080808-11000593.nocrc
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Query sequence: ef05178
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04118.4.ls Dopey, N-terminal                              794.2   7.1e-236   1
PF04118.4.fs Dopey, N-terminal                              792.1     3e-235   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04118.4.fs   1/1       5   317 ..     1   318 []   792.1   3e-235
PF04118.4.ls   1/1       5   317 ..     1   318 []   794.2 7.1e-236

Alignments of top-scoring domains:
PF04118.4.fs: domain 1 of 1, from 5 to 317: score 792.1, E = 3e-235
                   *->lneeqdlsnDaKYRkYakaIdKALrnFEtssEWADLISaLGKLaKvl
                      ++eeq+l+nD++YR+Y+++I+KALrnFE+ssEWADLIS+LGKL+K+l
     ef05178     5    DPEEQELLNDYRYRSYSSVIEKALRNFESSSEWADLISSLGKLNKAL 51   

                   QSNskfvvIPrRLlvsKRLAqCLHPALPSGVHLKALETYdvIFeIiGpkk
                   QSN++++++PrRLl+sKRLAqCLHPALPSGVHLKALETY++IF+I+G+k+
     ef05178    52 QSNLRYSLLPRRLLISKRLAQCLHPALPSGVHLKALETYEIIFKIVGTKW 101  

                   LaeeLflySvGLFPLlshaaikVkpeLltIyEkYfVPLGkkLRPaLqaFl
                   La++LflyS+GLFPLl+haa++V+p+Llt+yEkYf+PL+k+L+P+LqaF+
     ef05178   102 LAKDLFLYSCGLFPLLAHAAVSVRPVLLTLYEKYFLPLQKLLLPSLQAFI 151  

                   iGlLpGLEEGvdeseREvyaLLdrlckvVnDpkvFYtcLWssiLssPsiR
                   +GlLpGLEEG+++s+R ++aLL+rl++vV+ ++vFYt+LW+s+L+sPsiR
     ef05178   152 VGLLPGLEEGSEISDR-TDALLLRLSLVVG-KEVFYTALWGSVLASPSIR 199  

                   LPAlvYllehfNklaeedeQiyviGdnselmVksLcAalsDsGdiLVQRn
                   LPA+v++++h+N++a+++eQ+y++G+n++l+VksL+A+l+Ds ++LVQRn
     ef05178   200 LPASVFVVGHINRDAPGREQKYMLGTNHQLTVKSLRASLLDS-NVLVQRN 248  

                   lLdfLLlyFPlqstllsnedPFlvkLLrrslasILsAAtqtLLRRDmSLN
                   +L+++L++FP++++l+sne+  +++LLr+++++ILsAAtqtLLRRDmSLN
     ef05178   249 NLEIVLFFFPFYTCLDSNER--AIPLLRSDIVRILSAATQTLLRRDMSLN 296  

                   RRLYaWLlGssvetnlvisdS<-*
                   RRLYaWLlGs++++n+v+++S   
     ef05178   297 RRLYAWLLGSDIKGNTVVPES    317  

PF04118.4.ls: domain 1 of 1, from 5 to 317: score 794.2, E = 7.1e-236
                   *->lneeqdlsnDaKYRkYakaIdKALrnFEtssEWADLISaLGKLaKvl
                      ++eeq+l+nD++YR+Y+++I+KALrnFE+ssEWADLIS+LGKL+K+l
     ef05178     5    DPEEQELLNDYRYRSYSSVIEKALRNFESSSEWADLISSLGKLNKAL 51   

                   QSNskfvvIPrRLlvsKRLAqCLHPALPSGVHLKALETYdvIFeIiGpkk
                   QSN++++++PrRLl+sKRLAqCLHPALPSGVHLKALETY++IF+I+G+k+
     ef05178    52 QSNLRYSLLPRRLLISKRLAQCLHPALPSGVHLKALETYEIIFKIVGTKW 101  

                   LaeeLflySvGLFPLlshaaikVkpeLltIyEkYfVPLGkkLRPaLqaFl
                   La++LflyS+GLFPLl+haa++V+p+Llt+yEkYf+PL+k+L+P+LqaF+
     ef05178   102 LAKDLFLYSCGLFPLLAHAAVSVRPVLLTLYEKYFLPLQKLLLPSLQAFI 151  

                   iGlLpGLEEGvdeseREvyaLLdrlckvVnDpkvFYtcLWssiLssPsiR
                   +GlLpGLEEG+++s+R ++aLL+rl++vV+ ++vFYt+LW+s+L+sPsiR
     ef05178   152 VGLLPGLEEGSEISDR-TDALLLRLSLVVG-KEVFYTALWGSVLASPSIR 199  

                   LPAlvYllehfNklaeedeQiyviGdnselmVksLcAalsDsGdiLVQRn
                   LPA+v++++h+N++a+++eQ+y++G+n++l+VksL+A+l+Ds ++LVQRn
     ef05178   200 LPASVFVVGHINRDAPGREQKYMLGTNHQLTVKSLRASLLDS-NVLVQRN 248  

                   lLdfLLlyFPlqstllsnedPFlvkLLrrslasILsAAtqtLLRRDmSLN
                   +L+++L++FP++++l+sne+  +++LLr+++++ILsAAtqtLLRRDmSLN
     ef05178   249 NLEIVLFFFPFYTCLDSNER--AIPLLRSDIVRILSAATQTLLRRDMSLN 296  

                   RRLYaWLlGssvetnlvisdS<-*
                   RRLYaWLlGs++++n+v+++S   
     ef05178   297 RRLYAWLLGSDIKGNTVVPES    317  

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