hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-11241079/chunk_1/iprscan-20080808-11241079.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ef05385y1 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00063.11.fs Myosin head (motor domain) 836.8 1e-248 2 PF00063.11.ls Myosin head (motor domain) 828.4 3.6e-246 1 PF00620.17.fs RhoGAP domain 238.3 5.1e-70 1 PF00620.17.ls RhoGAP domain 240.2 4e-69 1 PF00612.17.ls IQ calmodulin-binding motif 105.1 2e-28 4 PF00612.17.fs IQ calmodulin-binding motif 97.1 5.9e-28 4 PF00788.13.ls Ras association (RalGDS/AF-6) domain 75.2 2e-19 1 PF00788.13.fs Ras association (RalGDS/AF-6) domain 73.7 5.5e-19 2 PF00130.12.fs Phorbol esters/diacylglycerol binding dom 25.3 2.9e-06 1 PF00130.12.ls Phorbol esters/diacylglycerol binding dom 27.2 1.5e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00788.13.ls 1/1 21 120 .. 1 97 [] 75.2 2e-19 PF00788.13.fs 1/2 21 120 .. 1 97 [] 73.2 7.5e-19 PF00063.11.ls 1/1 154 947 .. 1 791 [] 828.4 3.6e-246 PF00063.11.fs 1/2 154 680 .. 1 607 [. 699.8 1.8e-207 PF00063.11.fs 2/2 826 947 .. 651 791 .] 137.0 1.9e-40 PF00612.17.fs 1/4 963 983 .. 1 21 [] 19.5 9.7e-05 PF00612.17.ls 1/4 963 983 .. 1 21 [] 21.5 0.0028 PF00612.17.ls 2/4 986 1006 .. 1 21 [] 28.9 1.7e-05 PF00612.17.fs 2/4 986 1006 .. 1 21 [] 26.9 6e-07 PF00612.17.ls 3/4 1008 1028 .. 1 21 [] 28.1 2.8e-05 PF00612.17.fs 3/4 1008 1028 .. 1 21 [] 26.1 1e-06 PF00612.17.fs 4/4 1031 1051 .. 1 21 [] 24.5 3.1e-06 PF00612.17.ls 4/4 1031 1051 .. 1 21 [] 26.5 8.6e-05 PF00130.12.ls 1/1 1639 1690 .. 1 55 [] 27.2 1.5e-05 PF00130.12.fs 1/1 1639 1690 .. 1 55 [] 25.3 2.9e-06 PF00620.17.ls 1/1 1719 1868 .. 1 155 [] 240.2 4e-69 PF00620.17.fs 1/1 1719 1868 .. 1 155 [] 238.3 5.1e-70 Alignments of top-scoring domains: PF00788.13.ls: domain 1 of 1, from 21 to 120: score 75.2, E = 2e-19 *->dsgvlrVygedgtpgt..yktilvskntTaeeViralLrKfgldadd + ++l +y++ t +++ ++ + ++k++T+++Vi+ + ++l d ef05385y1 21 AAYHLHIYPQLSTTESqaSCRVTATKDSTTSDVIKDAIASLRL--DG 65 pedyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaq.......rs ++ yvLvE v+e+ggee+ vL+ ++ P+ +l ++r+aq+++++++++ ef05385y1 66 TKCYVLVE---VKESGGEEW-VLDANDSPVHRVLLWPRRAQdehpqedGY 111 rFlLrrred<-* FlL++r++ ef05385y1 112 YFLLQERNA 120 PF00788.13.fs: domain 1 of 2, from 21 to 120: score 73.2, E = 7.5e-19 *->dsgvlrVygedgtpgt..yktilvskntTaeeViralLrKfgldadd + ++l +y++ t +++ ++ + ++k++T+++Vi+ + ++l d ef05385y1 21 AAYHLHIYPQLSTTESqaSCRVTATKDSTTSDVIKDAIASLRL--DG 65 pedyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaq.......rs ++ yvLvE v+e+ggee+ vL+ ++ P+ +l ++r+aq+++++++++ ef05385y1 66 TKCYVLVE---VKESGGEEW-VLDANDSPVHRVLLWPRRAQdehpqedGY 111 rFlLrrred<-* FlL++r++ ef05385y1 112 YFLLQERNA 120 PF00063.11.ls: domain 1 of 1, from 154 to 947: score 828.4, E = 3.6e-246 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp +Dl++L+ l+E ++L NLk+R+ +++IYTY G +Lv++NP+k Lp ef05385y1 154 FDDLCNLPELTEGNLLKNLKHRFL-QQKIYTYAGSILVAINPFKFLP 199 iYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA iY ++ +k+Y++++ g+l+PH+FA+Ad AY Ml+ + NQ+I+isGESG ef05385y1 200 IYNPKYVKMYENQQLGKLEPHVFALADVAYYTMLRKRVNQCIVISGESGS 249 GKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsNPiLEA GKT +t ++ l+++s ++ ++ +e +il + P+LEA ef05385y1 250 GKTQSTNFLIHCLTALSQKGY-AS-----------GVERTILGAGPVLEA 287 FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy FGNAKT NNNSSRFGKfi++++ ++G + G+++e+YLLEKSR v ef05385y1 288 FGNAKTAHNNNSSRFGKFIQVSYLESGIV----RGAVVEKYLLEKSRLVS 333 QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc Q+++ERN+H+FY+LL g s++e ++e++L+ p+dY+YLnq ef05385y1 334 QEKDERNYHVFYYLLLGVSEEE-RQEFQLK---QPEDYFYLNQ-H----N 374 ytvDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNieGFk +++ dg D F+ +++A+ +Gf ++++if +l+AIL+LGN+ k ef05385y1 375 LKIEDGEDLKHDFERLKQAMEMVGFLPATKKQIFAVLSAILYLGNVT-YK 423 qdqatTGneeqAGvtvsedteeileiiaeLLGvDaeeLekaLlsrriktG +++ TG+ee G v + + l + LL+v e L L++r+ +t ef05385y1 424 KRA--TGREE--GLEVGPPEV--LDTLSQLLKVKREILVEVLTKRKTVTV 467 gggkRretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLsakeQ +++ p + +A+ aRD++AK +Ys+LFdWiV +iN aL k+ ef05385y1 468 -----NDKLILPYSLSEAITARDSMAKSLYSALFDWIVLRINHALLNKK- 511 asdSrGGqaaegdDTVSITVVdlPraaldktasf.IGvLDIyGFEIFaek ++ ++ +IGvLDI+GFE F e+ ef05385y1 512 -------------------------DVEEAVSCLsIGVLDIFGFEDF-ER 535 NSFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglDnqac NSFEQ+cINY+NE+LQ++FN+h+FklEQEEY+ EgI+W +I y +Dn c ef05385y1 536 NSFEQFCINYANEQLQYYFNQHIFKLEQEEYQGEGITWHNIGY-TDNVGC 584 idLIEkKkPpGIlslLDEeCrfPkatDqtFldKLlqtfsskhprlthFAq i LI k kP G+++lLDEe++fP+at qt+l+K q+++++ + + ef05385y1 585 IHLISK-KPTGLFYLLDEESNFPHATSQTLLAKFKQQHEDNKY---FL-G 629 kpgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfddlisllk p+ ++ +Fii H+AG+V Y++ +f eKN+D +d ++ll+ ef05385y1 630 TPV---------MEPAFIIQHFAGKVKYQIKDFREKNMDYMRPDIVALLR 670 sSsdepllaeLFpeeel................................. S++ + ++eL + + + + ++ ++ + ++ ++ ef05385y1 671 GSDS-SYVRELIGMDPVavfrwavlraairamavlreagrlraeraekaa 719 .................................................. + ++++ ++++++ +++ ++++++ ++ +++ ++ ++ + +++++++ ef05385y1 720 gmsspgaqshpeelprgastpseklyrdlhnqmiksikglpwqgedprsl 769 ...............................................seA ++ ++ ++++ ++++ ++++ +++ ++++ + + + +++ ef05385y1 770 lqslsrlqkprafilkskgikqkqiipknlldskslkliismtlhdrTTK 819 aNltlkapdfeadfdeeeaaaksaklgsgkgksgkkknfleTvgsqfkes + l kkk++ + ++qf +s ef05385y1 820 SLLH----------------------------LHKKKKP-PSISAQFQTS 840 lgeLmktLsstAnlnPHfvRCIKPNekKkagqFDaslVlhQlrclGvLEi l++L+++L + +P f+RCI+ N +Kk FD++lVl+Qlr+ G+LE ef05385y1 841 LNKLLEALGKA---EPFFIRCIRSNAEKKELCFDDELVLQQLRYTGMLE- 886 giRirraGFPnRitfdeFlqRYrlLapktwpsgfrpewvgdakkgceliL ++Rirr G++ +tf++F + +++L pk++ ++++ ++L ef05385y1 887 TVRIRRSGYSAKYTFQDFTEQFQVLLPKDA---------QPCREVISTLL 927 qslrqtpgnlDkeeyrfGkTKiFfR<-* +++ ++Dk y++GkTK+F++ ef05385y1 928 EKM-----KIDKRNYQIGKTKVFLK 947 PF00063.11.fs: domain 1 of 2, from 154 to 680: score 699.8, E = 1.8e-207 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp +Dl++L+ l+E ++L NLk+R+ +++IYTY G +Lv++NP+k Lp ef05385y1 154 FDDLCNLPELTEGNLLKNLKHRFL-QQKIYTYAGSILVAINPFKFLP 199 iYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA iY ++ +k+Y++++ g+l+PH+FA+Ad AY Ml+ + NQ+I+isGESG ef05385y1 200 IYNPKYVKMYENQQLGKLEPHVFALADVAYYTMLRKRVNQCIVISGESGS 249 GKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsNPiLEA GKT +t ++ l+++s ++ ++ +e +il + P+LEA ef05385y1 250 GKTQSTNFLIHCLTALSQKGY-AS-----------GVERTILGAGPVLEA 287 FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy FGNAKT NNNSSRFGKfi++++ ++G + G+++e+YLLEKSR v ef05385y1 288 FGNAKTAHNNNSSRFGKFIQVSYLESGIV----RGAVVEKYLLEKSRLVS 333 QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc Q+++ERN+H+FY+LL g s++e ++e++L+ p+dY+YLnq ef05385y1 334 QEKDERNYHVFYYLLLGVSEEE-RQEFQLK---QPEDYFYLNQ-H----N 374 ytvDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNieGFk +++ dg D F+ +++A+ +Gf ++++if +l+AIL+LGN+ k ef05385y1 375 LKIEDGEDLKHDFERLKQAMEMVGFLPATKKQIFAVLSAILYLGNVT-YK 423 qdqatTGneeqAGvtvsedteeileiiaeLLGvDaeeLekaLlsrriktG +++ TG+ee G v + + l + LL+v e L L++r+ +t ef05385y1 424 KRA--TGREE--GLEVGPPEV--LDTLSQLLKVKREILVEVLTKRKTVTV 467 gggkRretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLsakeQ +++ p + +A+ aRD++AK +Ys+LFdWiV +iN aL k+ ef05385y1 468 -----NDKLILPYSLSEAITARDSMAKSLYSALFDWIVLRINHALLNKK- 511 asdSrGGqaaegdDTVSITVVdlPraaldktasf.IGvLDIyGFEIFaek ++ ++ +IGvLDI+GFE F e+ ef05385y1 512 -------------------------DVEEAVSCLsIGVLDIFGFEDF-ER 535 NSFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglDnqac NSFEQ+cINY+NE+LQ++FN+h+FklEQEEY+ EgI+W +I y +Dn c ef05385y1 536 NSFEQFCINYANEQLQYYFNQHIFKLEQEEYQGEGITWHNIGY-TDNVGC 584 idLIEkKkPpGIlslLDEeCrfPkatDqtFldKLlqtfsskhprlthFAq i LI k kP G+++lLDEe++fP+at qt+l+K q+++++ + + ef05385y1 585 IHLISK-KPTGLFYLLDEESNFPHATSQTLLAKFKQQHEDNKY---FL-G 629 kpgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfddlisllk p+ ++ +Fii H+AG+V Y++ +f eKN+D +d ++ll+ ef05385y1 630 TPV---------MEPAFIIQHFAGKVKYQIKDFREKNMDYMRPDIVALLR 670 sSsdepllaeL<-* S++ + ++eL ef05385y1 671 GSDS-SYVREL 680 PF00063.11.fs: domain 2 of 2, from 826 to 947: score 137.0, E = 1.9e-40 *->kkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKPNekKkag kkk++ + ++qf +sl++L+++L + +P f+RCI+ N +Kk ef05385y1 826 KKKKP-PSISAQFQTSLNKLLEALGKA---EPFFIRCIRSNAEKKEL 868 qFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrlLapktwp FD++lVl+Qlr+ G+LE ++Rirr G++ +tf++F + +++L pk++ ef05385y1 869 CFDDELVLQQLRYTGMLE-TVRIRRSGYSAKYTFQDFTEQFQVLLPKDA- 916 sgfrpewvgdakkgceliLqslrqtpgnlDkeeyrfGkTKiFfR<-* ++++ ++L+++ ++Dk y++GkTK+F++ ef05385y1 917 --------QPCREVISTLLEKM-----KIDKRNYQIGKTKVFLK 947 PF00612.17.fs: domain 1 of 4, from 963 to 983: score 19.5, E = 9.7e-05 *->rraaikIQaawRGylaRkryk<-* r ++++Q+++R+ l R+++ ef05385y1 963 VRKILLLQSWFRMVLERRHFL 983 PF00612.17.ls: domain 1 of 4, from 963 to 983: score 21.5, E = 0.0028 *->rraaikIQaawRGylaRkryk<-* r ++++Q+++R+ l R+++ ef05385y1 963 VRKILLLQSWFRMVLERRHFL 983 PF00612.17.ls: domain 2 of 4, from 986 to 1006: score 28.9, E = 1.7e-05 *->rraaikIQaawRGylaRkryk<-* +raa++IQa+wR y++R++++ ef05385y1 986 KRAAVTIQACWRSYRVRRALE 1006 PF00612.17.fs: domain 2 of 4, from 986 to 1006: score 26.9, E = 6e-07 *->rraaikIQaawRGylaRkryk<-* +raa++IQa+wR y++R++++ ef05385y1 986 KRAAVTIQACWRSYRVRRALE 1006 PF00612.17.ls: domain 3 of 4, from 1008 to 1028: score 28.1, E = 2.8e-05 *->rraaikIQaawRGylaRkryk<-* ++aa+ +Qa wRGy++Rk y+ ef05385y1 1008 TQAAVYLQASWRGYWQRKLYR 1028 PF00612.17.fs: domain 3 of 4, from 1008 to 1028: score 26.1, E = 1e-06 *->rraaikIQaawRGylaRkryk<-* ++aa+ +Qa wRGy++Rk y+ ef05385y1 1008 TQAAVYLQASWRGYWQRKLYR 1028 PF00612.17.fs: domain 4 of 4, from 1031 to 1051: score 24.5, E = 3.1e-06 *->rraaikIQaawRGylaRkryk<-* ++++i++Q+ +RG+l+Rk + ef05385y1 1031 KQSIIRLQSLCRGHLQRKSFS 1051 PF00612.17.ls: domain 4 of 4, from 1031 to 1051: score 26.5, E = 8.6e-05 *->rraaikIQaawRGylaRkryk<-* ++++i++Q+ +RG+l+Rk + ef05385y1 1031 KQSIIRLQSLCRGHLQRKSFS 1051 PF00130.12.ls: domain 1 of 1, from 1639 to 1690: score 27.2, E = 1.5e-05 *->HhFvhrwtfkqptfCdhCgeflwgslgkqGlkCswCklnvHkrChek H F + p +C++C + + +l +l Cs+Ck+++Hk+C++k ef05385y1 1639 HVFASY-QVSIPQSCEQCLSYI--WLMDKALLCSVCKMTCHKKCVHK 1682 VppeCgcg<-* + C ef05385y1 1683 IQSHCSYT 1690 PF00130.12.fs: domain 1 of 1, from 1639 to 1690: score 25.3, E = 2.9e-06 *->HhFvhrwtfkqptfCdhCgeflwgslgkqGlkCswCklnvHkrChek H F + p +C++C + + +l +l Cs+Ck+++Hk+C++k ef05385y1 1639 HVFASY-QVSIPQSCEQCLSYI--WLMDKALLCSVCKMTCHKKCVHK 1682 VppeCgcg<-* + C ef05385y1 1683 IQSHCSYT 1690 PF00620.17.ls: domain 1 of 1, from 1719 to 1868: score 240.2, E = 4e-69 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln P+++ek++e++e++GL tEG+yR+sG + r +eLr+a+ ++++ + ef05385y1 1719 PIVLEKLLEHVEMHGLYTEGLYRKSGAANRTRELRQALQTDPAAV-- 1763 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea le++ +h+++++LK++LReLPePL+tf++y +f++ a+++++++e+l a ef05385y1 1764 KLENFPIHAITGVLKQWLRELPEPLMTFAQYGDFLR-AVELPEKQEQLAA 1812 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr ++++l+ LP+aN++ L++L+ hL++Va ++vN+M++ +LAi+F+P+Llr ef05385y1 1813 IYAVLEHLPEANHNSLERLIFHLVKVALLEDVNRMSPGALAIIFAPCLLR 1862 ppdgdsad<-* +pd ++d ef05385y1 1863 CPD--NSD 1868 PF00620.17.fs: domain 1 of 1, from 1719 to 1868: score 238.3, E = 5.1e-70 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln P+++ek++e++e++GL tEG+yR+sG + r +eLr+a+ ++++ + ef05385y1 1719 PIVLEKLLEHVEMHGLYTEGLYRKSGAANRTRELRQALQTDPAAV-- 1763 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea le++ +h+++++LK++LReLPePL+tf++y +f++ a+++++++e+l a ef05385y1 1764 KLENFPIHAITGVLKQWLRELPEPLMTFAQYGDFLR-AVELPEKQEQLAA 1812 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr ++++l+ LP+aN++ L++L+ hL++Va ++vN+M++ +LAi+F+P+Llr ef05385y1 1813 IYAVLEHLPEANHNSLERLIFHLVKVALLEDVNRMSPGALAIIFAPCLLR 1862 ppdgdsad<-* +pd ++d ef05385y1 1863 CPD--NSD 1868 //