hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-11241079/chunk_1/iprscan-20080808-11241079.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ef05385y1 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00242 1171.8 0 1 SM00324 246.3 2.6e-69 1 SM00314 98.9 6e-25 1 SM00015 92.2 6.2e-23 4 SM00109 54.1 1.8e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00314 1/1 21 120 .. 1 102 [] 98.9 6e-25 SM00242 1/1 146 960 .. 1 771 [] 1171.8 0 SM00015 1/4 961 983 .. 1 23 [] 20.1 0.3 SM00015 2/4 984 1006 .. 1 23 [] 26.0 0.0053 SM00015 3/4 1007 1028 .. 1 23 [] 23.0 0.042 SM00015 4/4 1029 1051 .. 1 23 [] 23.1 0.04 SM00109 1/1 1639 1687 .. 1 61 [] 54.1 1.8e-11 SM00324 1/1 1716 1891 .. 1 193 [] 246.3 2.6e-69 Alignments of top-scoring domains: SM00314: domain 1 of 1, from 21 to 120: score 98.9, E = 6e-25 *->dtyvlrVyvddlsavdpgqtyktlrvskrtTardViqqllekfhltd + y+l++y+++ + +++q+++ + ++k++T++dVi++++ ++l++ ef05385y1 21 AAYHLHIYPQL--STTESQASCRVTATKDSTTSDVIKDAIASLRLDG 65 edpeeYvLvevlpsggkErvLlddenPlqlqklwprda.ks.prqsslrF ++YvLvev++sgg+E+vL+ +++P++ ++lwpr+a+ ++p+ + + F ef05385y1 66 --TKCYVLVEVKESGGEEWVLDANDSPVHRVLLWPRRAqDEhPQEDGYYF 113 vLrkrdd<-* +L++r++ ef05385y1 114 LLQERNA 120 SM00242: domain 1 of 1, from 146 to 960: score 1171.8, E = 0 *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav p+++ + +D+++L+ L+E ++l NLk+R+l+ +IYTY+G++Lva+ ef05385y1 146 LLPRQQADFDDLCNLPELTEGNLLKNLKHRFLQQKIYTYAGSILVAI 192 NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre NP+k+l piY++ ++k+Y ++++g+l PHvFA+AD AY+ Mlr ef05385y1 193 NPFKFL-PIYNPKYVKMYE------NQQLGKLEPHVFALADVAYYTMLRK 235 keNQsIiISGESGAGKTEatKkimqYLAavsg..svesvedqiLesNPiL + NQ+I+ISGESG+GKT +t +++ +L+a+s+++ +++ve +iL + P+L ef05385y1 236 RVNQCIVISGESGSGKTQSTNFLIHCLTALSQkgYASGVERTILGAGPVL 285 EAFGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEKSRVVsQa EAFGNAKT +NnNSSRFGKfi++ + e+G ++GA++e YLLEKSR VsQ ef05385y1 286 EAFGNAKTAHNNNSSRFGKFIQVSYLESGIVRGAVVEKYLLEKSRLVSQE 335 kgERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqggtpfankr k+ERNYH+FY+LL G see+++e+ L++ pedY+YLnq++ ef05385y1 336 KDERNYHVFYYLLLGVSEEERQEFQLKQ----PEDYFYLNQHN------- 374 yssgcltvdgiDDaeeFkeTdEvtlkAmrvlGfseeEqesIFrilAAILH + dg D +++F++ +++Am+ +Gf + +IF +l+AIL+ ef05385y1 375 ----LKIEDGEDLKHDFER----LKQAMEMVGFLPATKKQIFAVLSAILY 416 LGNieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpeeLekaLtkR LGN+++++++ +++++ + v +e+l+++++LL+v+ e L + LtkR ef05385y1 417 LGNVTYKKRA---TGREEGLE-VGPPEVLDTLSQLLKVKREILVEVLTKR 462 kiktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWLVkrINksl.. k++t ++ + + p+++ +A+ aRD++AK +Ys LFdW+V rIN +l + ef05385y1 463 KTVTVND---KLILPYSLSEAITARDSMAKSLYSALFDWIVLRINHALln 509 ........sayfIGVLDIyGFEiFekNSFEQfCINyaNEKLQQfFnqhvF +++ ++ s+++IGVLDI+GFE Fe+NSFEQfCINyaNE+LQ++Fnqh+F ef05385y1 510 kkdveeavSCLSIGVLDIFGFEDFERNSFEQFCINYANEQLQYYFNQHIF 559 KlEQEEYerEGIeWtfIdFfliDNQpciDLIEkKgkrPlGIlslLDEeCl KlEQEEY+ EGI W +I ++ DN ci LI kK P G+++lLDEe++ ef05385y1 560 KLEQEEYQGEGITWHNIGYT--DNVGCIHLISKK---PTGLFYLLDEESN 604 fHAqPkgTDqtFleKLnkalyhqhhkkhphfskprkSlkkgkpkkrfgrt f P +T qt+l+K +q+h++++ f + +++ ef05385y1 605 F---PHATSQTLLAKF-----KQQHEDNKYFLGT-----------PVMEP 635 aFiikHYAGdVtYnveGFLeKNkDtLfedlieLlqsSknpliasLFpeea aFii+H+AG+V Y++ +F+eKN+D+ ++d+++Ll+ S+++ +++L ++ ef05385y1 636 AFIIQHFAGKVKYQIKDFREKNMDYMRPDIVALLRGSDSSYVRELIGMDP 685 dqsssaakekss.ggagksrkagr.r.eps.k.................. + +++a + + ++ ++r+agr r e+++k + ++++ ++++++ ++ ef05385y1 686 VAVFRWAVLRAAiRAMAVLREAGRlRaERAeKaagmsspgaqshpeelpr 735 .................................................. + ++++++ ++ +++ ++ ++ + +++++++ ++ ++ ++++ + ef05385y1 736 gastpseklyrdlhnqmiksikglpwqgedprsllqslsrlqkprafilk 785 .................................gt..i.sskkrppTvGs +++ ++++ +++ ++++ + + + ++++++ + ++kk+pp++++ ef05385y1 786 skgikqkqiipknlldskslkliismtlhdrttKSllHlHKKKKPPSISA 835 qFk.sLneLmetLnstnPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvL qF++sLn+L+e+L + +P+FIRCI++N eKk +Fd++lVl+QLry G+L ef05385y1 836 QFQtSLNKLLEALGKAEPFFIRCIRSNAEKKELCFDDELVLQQLRYTGML 885 EniRIRraGFPyRlpfdeFlqRYkvLlpktwppwggewknrlfgdakkac E++RIRr G++ +++f++F ++++vLlpk+ +p+ +++ ef05385y1 886 ETVRIRRSGYSAKYTFQDFTEQFQVLLPKDAQPC------------REVI 923 ealLqslglgiegdnldeeeyqiGkTKvFlRnpgqlaeLEelRee<-* +lL++++ +d+ yqiGkTKvFl+ + ++L e + ef05385y1 924 STLLEKMK-------IDKRNYQIGKTKVFLK-ETERQALQETLHR 960 SM00015: domain 1 of 4, from 961 to 983: score 20.1, E = 0.3 *->rleraAiiIQaawRGylaRkryk<-* ++ r ++++Q+++R+ l R+++ ef05385y1 961 EVVRKILLLQSWFRMVLERRHFL 983 SM00015: domain 2 of 4, from 984 to 1006: score 26.0, E = 0.0053 *->rleraAiiIQaawRGylaRkryk<-* +++raA+ IQa+wR y++R+ ef05385y1 984 QMKRAAVTIQACWRSYRVRRALE 1006 SM00015: domain 3 of 4, from 1007 to 1028: score 23.0, E = 0.042 *->rleraAiiIQaawRGylaRkryk<-* +++aA+ +Qa wRGy +Rk y+ ef05385y1 1007 -RTQAAVYLQASWRGYWQRKLYR 1028 SM00015: domain 4 of 4, from 1029 to 1051: score 23.1, E = 0.04 *->rleraAiiIQaawRGylaRkryk<-* +++++i++Q+ +RG+l+Rk + ef05385y1 1029 HQKQSIIRLQSLCRGHLQRKSFS 1051 SM00109: domain 1 of 1, from 1639 to 1687: score 54.1, E = 1.8e-11 *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC H f + ++ p C++C ++iw ++k +l Cs+Ck++cHkkC ef05385y1 1639 HVFASYQVsIPQSCEQCLSYIWLMDK------ALLCSVCKMTCHKKC 1679 aekvpaqshksglsC<-* ++k+++ C ef05385y1 1680 VHKIQS-------HC 1687 SM00324: domain 1 of 1, from 1716 to 1891: score 246.3, E = 2.6e-69 *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged. +Pi++ek+ e++e++Gl teG+YR+sG + r++eLr+a+ +++ ef05385y1 1716 ASVPIVLEKLLEHVEMHGLYTEGLYRKSGAANRTRELRQALQTDPAa 1762 dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie + le++ +h+++g+LK++LReLPePL+tf++y++f++ ef05385y1 1763 V-------------KLENFPIHAITGVLKQWLRELPEPLMTFAQYGDFLR 1799 aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL a +l ++++e+l a++ +l++LP+an++ L++L+ HL ef05385y1 1800 AVEL--------------PEKQEQLAAIYAVLEHLPEANHNSLERLIfHL 1835 nrVaehsevNkMtarNLAivFgPtLlrpp........ltdikhqnkvvet +Va ++vN+M++ +LAi+F+P+Llr+p+++++ ++++d +++++ve+ ef05385y1 1836 VKVALLEDVNRMSPGALAIIFAPCLLRCPdnsdpltsMKDVLKITTCVEM 1885 lienad<-* li +++ ef05385y1 1886 LIKEQM 1891 //