hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-11380667/chunk_1/iprscan-20080808-11380667.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ef05795 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08454.1.ls RyR and IP3R Homology associated 1237.9 0 1 PF08454.1.fs RyR and IP3R Homology associated 1235.9 0 1 PF01365.12.ls RIH domain 614.8 6.9e-182 2 PF01365.12.fs RIH domain 612.7 3e-181 3 PF02815.9.fs MIR domain 107.5 5.7e-32 1 PF00520.21.fs Ion transport protein 60.5 1.5e-16 1 PF00520.21.ls Ion transport protein 62.2 1.5e-15 1 PF02815.9.ls MIR domain 16.5 8.5e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02815.9.ls 1/1 1 102 [. 1 208 [] 16.5 8.5e-06 PF02815.9.fs 1/1 10 102 .. 102 208 .] 107.5 5.7e-32 PF01365.12.ls 1/2 141 347 .. 1 229 [] 345.3 9.5e-101 PF01365.12.fs 1/3 141 347 .. 1 229 [] 343.4 3.4e-100 PF01365.12.ls 2/2 841 1015 .. 1 229 [] 269.5 6e-78 PF01365.12.fs 2/3 841 1015 .. 1 229 [] 267.8 2e-77 PF08454.1.fs 1/1 1041 1650 .. 1 725 [] 1235.9 0 PF08454.1.ls 1/1 1041 1650 .. 1 725 [] 1237.9 0 PF00520.21.fs 1/1 1961 2186 .. 1 224 [] 60.5 1.5e-16 PF00520.21.ls 1/1 1961 2186 .. 1 224 [] 62.2 1.5e-15 Alignments of top-scoring domains: PF02815.9.ls: domain 1 of 1, from 1 to 102: score 16.5, E = 8.5e-06 *->GyLhsgdvlrlfhseQqqiLtyphldqnndldvvflRttsyesgava + ef05795 1 ---------------------------KAA----------------- 3 tssrsLWriEvvqrdkwrggagkwellkdGsvfRlrHltTGrYLhshdek + ga TGr+ + + +k ef05795 4 -----------------GMGAQGR---------------TGRRNAGEKIK 21 dppvsekedwqkevsaYglrgfpgdatnDdkwrveifekksttgmgqeri Y+l+ +p++ nD+ +++fe+++tt++++++ ef05795 22 ----------------YCLVAVPHG--NDI---ASLFELDPTTLQKTDSF 50 kpgdskvrLrHvcTgcwLfshsvklkkprwGfeqeektcakkgkdegtmw +p++s+vrLrH+cT++w s++v++ + +ee+++ ++ gt++ ef05795 51 VPRNSYVRLRHLCTNTWIQSTNVPI------DIEEERPIRLM---LGTCP 91 yiEdkenfaLp<-* ++Edke+fa++ ef05795 92 TKEDKEAFAIV 102 PF02815.9.fs: domain 1 of 1, from 10 to 102: score 107.5, E = 5.7e-32 *->sekedwqkevsaYglrgfpgdatnDdkwrveifekksttgmgqerik ++ ++++ e+ Y+l+ +p++ nD+ +++fe+++tt++++++ + ef05795 10 RTGRRNAGEKIKYCLVAVPHG--NDI---ASLFELDPTTLQKTDSFV 51 pgdskvrLrHvcTgcwLfshsvklkkprwGfeqeektcakkgkdegtmwy p++s+vrLrH+cT++w s++v++ + +ee+++ ++ gt+++ ef05795 52 PRNSYVRLRHLCTNTWIQSTNVPI------DIEEERPIRLM---LGTCPT 92 iEdkenfaLp<-* +Edke+fa++ ef05795 93 KEDKEAFAIV 102 PF01365.12.ls: domain 1 of 2, from 141 to 347: score 345.3, E = 9.5e-101 *->evlklLedLikffaqpeeeqenkkhelklnnlkplrqrQkLlReegv +v++lLedL++f+++ ++ n++++l+++++kp+r+rQkL+Re+++ ef05795 141 FVIQLLEDLVFFVSDVPN---NGQNVLDIMVTKPNRERQKLMREQNI 184 lkvVLellqnpyteksagdgaellRLeelgdekdekmkeivrlcyrfLaa lk+V+++l++p++ek +g g+ l+RLeel+d+k++++++++rlcyr+L++ ef05795 185 LKQVFGILKAPFREK-GGEGP-LVRLEELSDQKNAPYQHMFRLCYRVLRH 232 fcrgnRqNQallakhldfLlwlasrlmqlqlgpGilaldtltavLhnNre +++++R+NQ+++ak+++ +mq+q+g++ila+dt+ta+LhnNr+ ef05795 233 SQEDYRKNQEHIAKQFG--------MMQSQIGYDILAEDTITALLHNNRK 274 LlneiieavEietfvsllekhGnRdpkvLdvLkslcvangkavrstQYld Ll+++i+++E+etfvsl++k nR+p++Ld+L++lcv+n+ a+++tQ + ef05795 275 LLEKHITKTEVETFVSLVRK--NREPRFLDYLSDLCVSNHIAIPVTQ--E 320 lickevlnpGesVEENaDlLiqtnlraseasl<-* lick+vl p++ +D+Li+t+lr +++ ef05795 321 LICKCVLDPKN-----SDILIRTELRPVKEMA 347 PF01365.12.fs: domain 1 of 3, from 141 to 347: score 343.4, E = 3.4e-100 *->evlklLedLikffaqpeeeqenkkhelklnnlkplrqrQkLlReegv +v++lLedL++f+++ ++ n++++l+++++kp+r+rQkL+Re+++ ef05795 141 FVIQLLEDLVFFVSDVPN---NGQNVLDIMVTKPNRERQKLMREQNI 184 lkvVLellqnpyteksagdgaellRLeelgdekdekmkeivrlcyrfLaa lk+V+++l++p++ek +g g+ l+RLeel+d+k++++++++rlcyr+L++ ef05795 185 LKQVFGILKAPFREK-GGEGP-LVRLEELSDQKNAPYQHMFRLCYRVLRH 232 fcrgnRqNQallakhldfLlwlasrlmqlqlgpGilaldtltavLhnNre +++++R+NQ+++ak+++ +mq+q+g++ila+dt+ta+LhnNr+ ef05795 233 SQEDYRKNQEHIAKQFG--------MMQSQIGYDILAEDTITALLHNNRK 274 LlneiieavEietfvsllekhGnRdpkvLdvLkslcvangkavrstQYld Ll+++i+++E+etfvsl++k nR+p++Ld+L++lcv+n+ a+++tQ + ef05795 275 LLEKHITKTEVETFVSLVRK--NREPRFLDYLSDLCVSNHIAIPVTQ--E 320 lickevlnpGesVEENaDlLiqtnlraseasl<-* lick+vl p++ +D+Li+t+lr +++ ef05795 321 LICKCVLDPKN-----SDILIRTELRPVKEMA 347 PF01365.12.ls: domain 2 of 2, from 841 to 1015: score 269.5, E = 6e-78 *->evlklLedLikffaqpeeeqenkkhelklnnlkplrqrQkLlReegv +v+++Le+L+k++ +e ++++++Q+Ll+++++ ef05795 841 IVKGILERLNKMCGVGE---------------QMRKKQQRLLKNMDA 872 lkvVLellqnpyteksagdgaellRLeelgdekdekmkeivrlcyrfLaa +kv+L+llq+py++ d+km+ei+r++++fL++ ef05795 873 HKVMLDLLQIPYDK------------------GDAKMMEILRYTHQFLQK 904 fcrgnRqNQallakhldfLlwlasrlmqlqlgpGilaldtltavLhnNre fc+gn+ NQall+khl+ l+l+pG+l+++t+++++ nN++ ef05795 905 FCAGNPGNQALLHKHLH-----------LFLTPGLLEAETMQHIFLNNYQ 943 LlneiieavEietfvsllekhGnRdpkvLdvLkslcvangkavrstQYld L++ei+e v +++fv+ll++hG R++++Ld+L+++++a+gk+v+++Q d ef05795 944 LCSEISEPV-LQHFVHLLATHG-RHVQYLDFLHTVIKAEGKYVKKCQ--D 989 lickevlnpGesVEENaDlLiqtnlraseasl<-* +i++e++n+G+ D+++++n++as a+l ef05795 990 MIMTELTNAGD------DVVVFYNDKASLAHL 1015 PF01365.12.fs: domain 2 of 3, from 841 to 1015: score 267.8, E = 2e-77 *->evlklLedLikffaqpeeeqenkkhelklnnlkplrqrQkLlReegv +v+++Le+L+k++ +e ++++++Q+Ll+++++ ef05795 841 IVKGILERLNKMCGVGE---------------QMRKKQQRLLKNMDA 872 lkvVLellqnpyteksagdgaellRLeelgdekdekmkeivrlcyrfLaa +kv+L+llq+py++ d+km+ei+r++++fL++ ef05795 873 HKVMLDLLQIPYDK------------------GDAKMMEILRYTHQFLQK 904 fcrgnRqNQallakhldfLlwlasrlmqlqlgpGilaldtltavLhnNre fc+gn+ NQall+khl+ l+l+pG+l+++t+++++ nN++ ef05795 905 FCAGNPGNQALLHKHLH-----------LFLTPGLLEAETMQHIFLNNYQ 943 LlneiieavEietfvsllekhGnRdpkvLdvLkslcvangkavrstQYld L++ei+e v +++fv+ll++hG R++++Ld+L+++++a+gk+v+++Q d ef05795 944 LCSEISEPV-LQHFVHLLATHG-RHVQYLDFLHTVIKAEGKYVKKCQ--D 989 lickevlnpGesVEENaDlLiqtnlraseasl<-* +i++e++n+G+ D+++++n++as a+l ef05795 990 MIMTELTNAGD------DVVVFYNDKASLAHL 1015 PF08454.1.fs: domain 1 of 1, from 1041 to 1650: score 1235.9, E = 0 *->LLaACteGKNvyTEIKCnsLLPlddivrvvthqdcipevKeaYinFL LLaAC eGKNvyTEIKC+sLLPl+d+v+vvth+dci+evK+aY+nF+ ef05795 1041 LLAACAEGKNVYTEIKCTSLLPLEDVVSVVTHEDCITEVKMAYVNFV 1087 nHCyiDTEvEmKEiyksnhiLpdKldpdsmrWqLFEKnflvDigrvlnat nHCy+DTEvEmKEiy+snhi W+LFE nf+ D++rv+++ ef05795 1088 NHCYVDTEVEMKEIYTSNHI-----------WTLFE-NFTLDMARVCSK- 1124 kdekhadktlEkyvtnevanvlthffnrkhSpFselsdqstplqtrqpvf ++++ ad tlEkyv++ v ++++ ff+ SpFs ++st+lqt+q++ ef05795 1125 REKRVADPTLEKYVLSVVLDTINAFFS---SPFS---ENSTSLQTHQTIV 1168 vkLLqsafrlsqckwlskqrKraWYRVeaCiRtltlygvARhRaInlPvd v+LLqs++rl++c+wl++q+K++ VeaCiRtl++ vA+ RaI lP+d ef05795 1169 VQLLQSTTRLLECPWLQQQHKGS---VEACIRTLAM--VAKGRAILLPMD 1213 Ldsqvnslfsktaska.flqryaskWletekghrr.rdsnsaisrdgrni Ld++++s++s++as+a ++qr+as++++t++ +++r++++a+++d++ni ef05795 1214 LDAHISSMLSSGASCAaAAQRNASSYKATTR--AFpRVTPTANQWDYKNI 1261 iEglqDlvsslEdqlkPLvqAElSVLVDvLyrPELLfpegsEarekcesg iE+lqD++++lE++lkPLvqAElSVLVDvL++PELLf egsEa+++cesg ef05795 1262 IEKLQDIITALEERLKPLVQAELSVLVDVLHWPELLFLEGSEAYQRCESG 1311 dflskLIkhtkklleeeeelagkLciFekvLYqtLaemmaksckhyeeeG +flskLI+htk+l+e+ee kLc +kvL +tL++m+ k++ +y+++G ef05795 1312 GFLSKLIQHTKDLMESEE----KLC--IKVL-RTLQQMLLKKT-KYGDRG 1353 dalrqlLLqRYfgeeselsfpedelpsgigplvepgkekksaggpsaeek ++lr++LLq+Y+++++ +s+++ ++p+g + + ef05795 1354 NQLRKMLLQNYLQNRKSTSRGDLPDPIG-------------------TGL 1384 erekqkLlevQcrLdkeGAaeLVldlisaskgepgeifvealeLGIALLe + ++ +++++QcrLdkeGA++LV+dli+ +k+e+ if+e++ L+I+LL+ ef05795 1385 DPDWSAIAATQCRLDKEGATKLVCDLITSTKNEK--IFQESIGLAIHLLD 1432 GGNteiQksmlnyLkedkkderFFkvladrMksAQqEiKsTVTVntlDwL GGNteiQks++n++++dkk+erFFkvl+drMk+AQqE+KsTV+Vn++D L ef05795 1433 GGNTEIQKSFHNLMMSDKKSERFFKVLHDRMKRAQQETKSTVAVNMND-L 1481 gafereekevvsetgkrrrnvsnaheaeg.kSlglvneegtkeeLyeaal g + +e++e+v++t+k+r++++++++++ ++Slg +++g+ ef05795 1482 GSQPHEDREPVDPTTKGRVASFSIPGSSSrYSLGPSLRRGH--------- 1522 atskayinsrrlasgdldhsilvlapleavdiLAEKLEKrederkegekl + +er + +++ ef05795 1523 ---------------------------------------EVSERVQSSEM 1533 sndvefmqpllRFLQLLCENHNldLQNyLRtQagNkTNvNLVseTLdFLL ++v++mqp+lRFLQLLCENHN+dLQN+LR+Q +NkTN+NLV+eTL+FL ef05795 1534 GTSVLIMQPILRFLQLLCENHNRDLQNFLRCQ-NNKTNYNLVCETLQFL- 1581 RLQDcICGFYWhYSTtGgLgllGlyinekNvsLinQtLeTLTEYCQGPCh D++CG STtGgLgllGlyine+Nv+L+ QtLeTLTEYCQGPCh ef05795 1582 ---DIMCG-----STTGGLGLLGLYINEDNVGLVIQTLETLTEYCQGPCH 1623 eNQnciAtHRLWDesNGldiitAliLndinp<-* eNQ+ci+tH esNG+diitAliLndi+p ef05795 1624 ENQTCIVTH----ESNGIDIITALILNDISP 1650 PF08454.1.ls: domain 1 of 1, from 1041 to 1650: score 1237.9, E = 0 *->LLaACteGKNvyTEIKCnsLLPlddivrvvthqdcipevKeaYinFL LLaAC eGKNvyTEIKC+sLLPl+d+v+vvth+dci+evK+aY+nF+ ef05795 1041 LLAACAEGKNVYTEIKCTSLLPLEDVVSVVTHEDCITEVKMAYVNFV 1087 nHCyiDTEvEmKEiyksnhiLpdKldpdsmrWqLFEKnflvDigrvlnat nHCy+DTEvEmKEiy+snhi W+LFE nf+ D++rv+++ ef05795 1088 NHCYVDTEVEMKEIYTSNHI-----------WTLFE-NFTLDMARVCSK- 1124 kdekhadktlEkyvtnevanvlthffnrkhSpFselsdqstplqtrqpvf ++++ ad tlEkyv++ v ++++ ff+ SpFs ++st+lqt+q++ ef05795 1125 REKRVADPTLEKYVLSVVLDTINAFFS---SPFS---ENSTSLQTHQTIV 1168 vkLLqsafrlsqckwlskqrKraWYRVeaCiRtltlygvARhRaInlPvd v+LLqs++rl++c+wl++q+K++ VeaCiRtl++ vA+ RaI lP+d ef05795 1169 VQLLQSTTRLLECPWLQQQHKGS---VEACIRTLAM--VAKGRAILLPMD 1213 Ldsqvnslfsktaska.flqryaskWletekghrr.rdsnsaisrdgrni Ld++++s++s++as+a ++qr+as++++t++ +++r++++a+++d++ni ef05795 1214 LDAHISSMLSSGASCAaAAQRNASSYKATTR--AFpRVTPTANQWDYKNI 1261 iEglqDlvsslEdqlkPLvqAElSVLVDvLyrPELLfpegsEarekcesg iE+lqD++++lE++lkPLvqAElSVLVDvL++PELLf egsEa+++cesg ef05795 1262 IEKLQDIITALEERLKPLVQAELSVLVDVLHWPELLFLEGSEAYQRCESG 1311 dflskLIkhtkklleeeeelagkLciFekvLYqtLaemmaksckhyeeeG +flskLI+htk+l+e+ee kLc +kvL +tL++m+ k++ +y+++G ef05795 1312 GFLSKLIQHTKDLMESEE----KLC--IKVL-RTLQQMLLKKT-KYGDRG 1353 dalrqlLLqRYfgeeselsfpedelpsgigplvepgkekksaggpsaeek ++lr++LLq+Y+++++ +s+++ ++p+g + + ef05795 1354 NQLRKMLLQNYLQNRKSTSRGDLPDPIG-------------------TGL 1384 erekqkLlevQcrLdkeGAaeLVldlisaskgepgeifvealeLGIALLe + ++ +++++QcrLdkeGA++LV+dli+ +k+e+ if+e++ L+I+LL+ ef05795 1385 DPDWSAIAATQCRLDKEGATKLVCDLITSTKNEK--IFQESIGLAIHLLD 1432 GGNteiQksmlnyLkedkkderFFkvladrMksAQqEiKsTVTVntlDwL GGNteiQks++n++++dkk+erFFkvl+drMk+AQqE+KsTV+Vn++D L ef05795 1433 GGNTEIQKSFHNLMMSDKKSERFFKVLHDRMKRAQQETKSTVAVNMND-L 1481 gafereekevvsetgkrrrnvsnaheaeg.kSlglvneegtkeeLyeaal g + +e++e+v++t+k+r++++++++++ ++Slg +++g+ ef05795 1482 GSQPHEDREPVDPTTKGRVASFSIPGSSSrYSLGPSLRRGH--------- 1522 atskayinsrrlasgdldhsilvlapleavdiLAEKLEKrederkegekl + +er + +++ ef05795 1523 ---------------------------------------EVSERVQSSEM 1533 sndvefmqpllRFLQLLCENHNldLQNyLRtQagNkTNvNLVseTLdFLL ++v++mqp+lRFLQLLCENHN+dLQN+LR+Q +NkTN+NLV+eTL+FL ef05795 1534 GTSVLIMQPILRFLQLLCENHNRDLQNFLRCQ-NNKTNYNLVCETLQFL- 1581 RLQDcICGFYWhYSTtGgLgllGlyinekNvsLinQtLeTLTEYCQGPCh D++CG STtGgLgllGlyine+Nv+L+ QtLeTLTEYCQGPCh ef05795 1582 ---DIMCG-----STTGGLGLLGLYINEDNVGLVIQTLETLTEYCQGPCH 1623 eNQnciAtHRLWDesNGldiitAliLndinp<-* eNQ+ci+tH esNG+diitAliLndi+p ef05795 1624 ENQTCIVTH----ESNGIDIITALILNDISP 1650 PF00520.21.fs: domain 1 of 1, from 1961 to 2186: score 60.5, E = 1.5e-16 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl +vf+v F+ i+++ ++ + +l + + + +vl ef05795 1961 TNKIVFVVSFVGNRGTFIRGYKAMVM---DMEFLYHVGY--ILTSVL 2002 pslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllRvLR ++++ ++ + ef05795 2003 GLFAHELFYSIL-------------------------------------- 2014 llrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaiig l+ li r ++ l ++ ++s++r+ +s+l +ll l+l++ F+i+g ef05795 2015 LFDLIYREET-----LFNV--IKSVTRNGRSILLTALLALILVYLFSIVG 2057 vqlFggklnkcc...................................... +++ ++ + +++ ++++++ ++ + +++ +++++++ ++ ++ + ef05795 2058 FLFLKDDFILEVdrlpnnhstasplgmphgaaafvdtcsgdkmdcvsgls 2107 .......npingntnFdsfgnaflwlFqtmTteGwgdvmpdtl....... ++ +++ + + t + ++ ++++ + g+ + d+l+++++++ ef05795 2108 vpevleeDRELDSTERACDTLLMCIVTVMNHGLRNGGGVGDILrkpskde 2157 agtvlgyiyfvsfiilgsflllNLfiavi<-* + ++ ++y ++f++++++++lNL+++vi ef05795 2158 SLFPARVVYDLLFFFIVIIIVLNLIFGVI 2186 PF00520.21.ls: domain 1 of 1, from 1961 to 2186: score 62.2, E = 1.5e-15 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl +vf+v F+ i+++ ++ + +l + + + +vl ef05795 1961 TNKIVFVVSFVGNRGTFIRGYKAMVM---DMEFLYHVGY--ILTSVL 2002 pslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllRvLR ++++ ++ + ef05795 2003 GLFAHELFYSIL-------------------------------------- 2014 llrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaiig l+ li r ++ l ++ ++s++r+ +s+l +ll l+l++ F+i+g ef05795 2015 LFDLIYREET-----LFNV--IKSVTRNGRSILLTALLALILVYLFSIVG 2057 vqlFggklnkcc...................................... +++ ++ + +++ ++++++ ++ + +++ +++++++ ++ ++ + ef05795 2058 FLFLKDDFILEVdrlpnnhstasplgmphgaaafvdtcsgdkmdcvsgls 2107 .......npingntnFdsfgnaflwlFqtmTteGwgdvmpdtl....... ++ +++ + + t + ++ ++++ + g+ + d+l+++++++ ef05795 2108 vpevleeDRELDSTERACDTLLMCIVTVMNHGLRNGGGVGDILrkpskde 2157 agtvlgyiyfvsfiilgsflllNLfiavi<-* + ++ ++y ++f++++++++lNL+++vi ef05795 2158 SLFPARVVYDLLFFFIVIIIVLNLIFGVI 2186 //