hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090626/iprscan-20090626-09414324/chunk_1/iprscan-20090626-09414324.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ef05920s1 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07714.7.ls Protein tyrosine kinase 526.6 2.5e-155 1 PF07714.7.fs Protein tyrosine kinase 524.7 9.2e-155 1 PF00069.15.fs Protein kinase domain 155.0 6.4e-44 2 PF07679.6.fs Immunoglobulin I-set domain 150.1 3.5e-43 6 PF00069.15.ls Protein kinase domain 152.0 1.5e-42 1 PF00047.15.fs Immunoglobulin domain 114.7 2.5e-31 7 PF00047.15.ls Immunoglobulin domain 107.1 4.9e-29 6 PF07679.6.ls Immunoglobulin I-set domain 102.5 1.1e-27 2 PF07686.7.fs Immunoglobulin V-set domain 47.1 8.7e-13 4 PF07686.7.ls Immunoglobulin V-set domain 39.8 8.8e-09 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07686.7.ls 1/3 343 451 .. 1 141 [] 17.3 0.00089 PF00047.15.ls 3/6 357 425 .. 1 65 [] 32.2 1.7e-06 PF00047.15.fs 3/7 357 425 .. 1 65 [] 30.2 1.6e-07 PF07679.6.ls 1/2 444 538 .. 1 96 [] 16.9 4.2e-05 PF07679.6.fs 2/6 466 517 .. 19 79 .. 29.2 6.6e-08 PF00047.15.ls 5/6 682 750 .. 1 65 [] 19.0 0.016 PF00047.15.fs 6/7 682 750 .. 1 65 [] 17.1 0.00061 PF07679.6.fs 6/6 773 860 .. 1 96 [] 83.7 8.4e-24 PF07679.6.ls 2/2 773 860 .. 1 96 [] 85.6 1.4e-22 PF07686.7.ls 3/3 773 861 .. 1 141 [] 15.9 0.0012 PF00047.15.ls 6/6 787 845 .. 1 65 [] 43.3 7.4e-10 PF00047.15.fs 7/7 787 845 .. 1 65 [] 41.5 1.3e-10 PF00069.15.fs 1/2 939 1037 .. 1 102 [. 41.3 1.3e-11 PF07714.7.fs 1/1 939 1266 .. 1 272 [] 524.7 9.2e-155 PF07714.7.ls 1/1 939 1266 .. 1 272 [] 526.6 2.5e-155 PF00069.15.ls 1/1 939 1266 .. 1 287 [] 152.0 1.5e-42 PF00069.15.fs 2/2 1105 1266 .. 103 287 .] 113.7 3.6e-32 Alignments of top-scoring domains: PF07686.7.ls: domain 1 of 3, from 343 to 451: score 17.3, E = 0.00089 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss ++q+++ pr +v +G ++ L+Ct + ++ ef05920s1 343 DVQIST--PR------------PVKLLRGHTLVLNCTAT---TPL-- 370 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls ++++ +++W++ p+++++ + ++ +++ +++ s ef05920s1 371 NTRV-QMTWSY---PDEKNKRAS----------VRRRIDQSNSHANIFYS 406 gnpskgdfsLtIsnlqlsDsGtYyCavsns.........nelvfgggtrL + LtI ++q D G Y+C v ++++ ++ +++ +++ + +++ ef05920s1 407 V--------LTIDKMQNKDKGLYTCRVRSGpsfksvntsVHIYDKAFITV 448 tVl<-* + ef05920s1 449 KHR 451 PF00047.15.ls: domain 3 of 6, from 357 to 425: score 32.2, E = 1.7e-06 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+++ L+C+++ + + v++tW + + + + + +++++ + ef05920s1 357 GHTLVLNCTATTPLNTRVQMTWSYPDEkNKrASVRRRIDQSNSHANI 403 t..sLtitnvtpeDggtYtCvv<-* + ++Lti +++ D g YtC+v ef05920s1 404 FysVLTIDKMQNKDKGLYTCRV 425 PF00047.15.fs: domain 3 of 7, from 357 to 425: score 30.2, E = 1.6e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+++ L+C+++ + + v++tW + + + + + +++++ + ef05920s1 357 GHTLVLNCTATTPLNTRVQMTWSYPDEkNKrASVRRRIDQSNSHANI 403 t..sLtitnvtpeDggtYtCvv<-* + ++Lti +++ D g YtC+v ef05920s1 404 FysVLTIDKMQNKDKGLYTCRV 425 PF07679.6.ls: domain 1 of 2, from 444 to 538: score 16.9, E = 4.2e-05 *->PkFtqkpkdveVqe...Ge.sarfeCkVtGtPePtVsWfKdGqplss +t k + ++V e+ G++s r++ kV+ +P P+V W+KdG p ++ ef05920s1 444 AFITVKHRKQQVLEtvaGKrSYRLSMKVKAFPSPEVVWLKDGLPATE 490 vllpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvA....tNsaGeae + ++ +g y+L+I++v+ +D+G Yt+ + +++N + + ef05920s1 491 -----KSARYLTRG----YSLIIKDVTEEDAGNYTILLsikqSNVFKNLT 531 asaeLtV<-* a+ ++V ef05920s1 532 ATLIVNV 538 PF07679.6.fs: domain 2 of 6, from 466 to 517: score 29.2, E = 6.6e-08 *->rfeCkVtGtPePtVsWfKdGqplssvllpsdrfkvtydgGsgtytLt r++ kV+ +P P+V W+KdG p ++ + ++ +g y+L+ ef05920s1 466 RLSMKVKAFPSPEVVWLKDGLPATE-----KSARYLTRG----YSLI 503 IsnvqpdDsGkYtC<-* I++v+ +D+G Yt+ ef05920s1 504 IKDVTEEDAGNYTI 517 PF00047.15.ls: domain 5 of 6, from 682 to 750: score 19.0, E = 0.016 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ge+++L+C+v +vtW + + +++ +s ++ + ef05920s1 682 GEDLKLSCTV--NKFLYRDVTWILLRTvNNrTMHYSIS---KQKMAI 723 t.......sLtitnvtpeDggtYtCvv<-* t++++ + Lti nv+ +D+gtY C++ ef05920s1 724 TkehsitlNLTIMNVSLQDSGTYACRA 750 PF00047.15.fs: domain 6 of 7, from 682 to 750: score 17.1, E = 0.00061 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ge+++L+C+v +vtW + + +++ +s ++ + ef05920s1 682 GEDLKLSCTV--NKFLYRDVTWILLRTvNNrTMHYSIS---KQKMAI 723 t.......sLtitnvtpeDggtYtCvv<-* t++++ + Lti nv+ +D+gtY C++ ef05920s1 724 TkehsitlNLTIMNVSLQDSGTYACRA 750 PF07679.6.fs: domain 6 of 6, from 773 to 860: score 83.7, E = 8.4e-24 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+ ++ ++d +V++ +s +++C++ G PeP+++WfK++ ++++ ef05920s1 773 PYLLRNLSDHTVAISSSTTLDCHANGVPEPQITWFKNNHKIQQ---- 815 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< ++ + +tL+I +v+ +D+G+Y C+AtN G++e+sa LtV ef05920s1 816 EPGIILGPGS----STLFIERVTEEDEGVYHCKATNQKGSVESSAYLTV 860 -* ef05920s1 - - PF07679.6.ls: domain 2 of 2, from 773 to 860: score 85.6, E = 1.4e-22 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+ ++ ++d +V++ +s +++C++ G PeP+++WfK++ ++++ ef05920s1 773 PYLLRNLSDHTVAISSSTTLDCHANGVPEPQITWFKNNHKIQQ---- 815 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< ++ + +tL+I +v+ +D+G+Y C+AtN G++e+sa LtV ef05920s1 816 EPGIILGPGS----STLFIERVTEEDEGVYHCKATNQKGSVESSAYLTV 860 -* ef05920s1 - - PF07686.7.ls: domain 3 of 3, from 773 to 861: score 15.9, E = 0.0012 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss + + ++++ tva s tL C+ + ef05920s1 773 PYLLRNLSDH--------------TVAISSSTTLDCHAN----GV-- 799 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls ++ +i+W++ ++ ++ ef05920s1 800 --PEPQITWFK---------------------------------NNHKIQ 814 gnps....kgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<- + p+ + g+ +L I ++ +D+G+Y+C n +++ ++ LtV ef05920s1 815 QEPGiilgPGSSTLFIERVTEEDEGVYHCKATNQ-KGSVESSAYLTVQ 861 * ef05920s1 - - PF00047.15.ls: domain 6 of 6, from 787 to 845: score 43.3, E = 7.4e-10 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq +s tL C++ g p++++tW++n+++++++ + + +++ ef05920s1 787 SSSTTLDCHA--NGVPEPQITWFKNNHkIQqEPGIILGPGSST---- 827 tsLtitnvtpeDggtYtCvv<-* L i +vt+eD+g+Y C + ef05920s1 828 --LFIERVTEEDEGVYHCKA 845 PF00047.15.fs: domain 7 of 7, from 787 to 845: score 41.5, E = 1.3e-10 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq +s tL C++ g p++++tW++n+++++++ + + +++ ef05920s1 787 SSSTTLDCHA--NGVPEPQITWFKNNHkIQqEPGIILGPGSST---- 827 tsLtitnvtpeDggtYtCvv<-* L i +vt+eD+g+Y C + ef05920s1 828 --LFIERVTEEDEGVYHCKA 845 PF00069.15.fs: domain 1 of 2, from 939 to 1037: score 41.3, E = 1.3e-11 *->yelleklGsGsfGtV.....ykakhkgtgkiVAvKiikkrkekskkd ++l++ lG+G+fG+V + + + k+ t+++VAvK +k + s + ef05920s1 939 LKLGKSLGRGAFGKVvqasaFGIKKSPTCRTVAVKMLKEGATAS--E 983 ktarrlsEiqilkrL.sHpNIvrlidvfed.kdhlylVlEycegGLrvld + a+ + E++il ++++H N+v l+++++ +++ l ++ Eyc G ef05920s1 984 YKALMT-ELKILTHIgHHLNVVNLLGACTKqGGPLMVIVEYCKYG----N 1028 Lfdylsetrrkg<-* L+ yl+ +k+ ef05920s1 1029 LSNYLK---SKR 1037 PF07714.7.fs: domain 1 of 1, from 939 to 1266: score 524.7, E = 9.2e-155 *->lklgkkLGeGaFGeVykGtlkg.sgdgteikVAVKtLkeigaseeei lklgk LG+GaFG+V+++ ++g +++ t+ +VAVK+Lke ga+ +e ef05920s1 939 LKLGKSLGRGAFGKVVQASAFGiKKSPTCRTVAVKMLKE-GATASE- 983 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd ++++ E++i++++G+H N+V+LlG+ctk+g+P l++++Ey+++G+ ef05920s1 984 -YKALMTELKILTHIGHHLNVVNLLGACTKQGGP----LMVIVEYCKYGN 1028 LldfLrkhr......................................... L ++L+++r+ +++ + ++++++ +++ +++++++ ++ +++++ ef05920s1 1029 LSNYLKSKRdlfflnkdaalhmepkkekmepgleqgkkprldsvtssesf 1078 .......................egrpLtlkdLlsfalQiAkGMeYLesk +++ +++++ ++ ++++++++ ++p+t++dL+s+++Q+A+GMe+L+s+ ef05920s1 1079 assgfqedkslsdveeeedsdgfYKEPITMEDLISYSFQVARGMEFLSSR 1128 nfvHRDLAARNcLVsenlvVKIsDFGLaRdiynddyYvrkkgggklPvkW +++HRDLAARN+L+sen+vVKI+DFGLaRdiy+ Y + kg+++lP kW ef05920s1 1129 KCIHRDLAARNILLSENNVVKICDFGLARDIYKNPDY-VRKGDTRLPLKW 1177 mAPEslkygkFtskSDVWSFGVlLWEiftlGeqPFYpgm.sneevlelly mAPEs++++++++kSDVWS+GVlLWEif+lG++P Ypg++ +e+++ +l ef05920s1 1178 MAPESIFDKIYSTKSDVWSYGVLLWEIFSLGGSP-YPGVqMDEDFCSRL- 1225 edGyRLprPenCPdelYdlMlqCWaedPedRPtFselveeL<-* ++G R+ +Pe+ ++e+Y++Ml+CW++dP++RP+F+elve+L ef05920s1 1226 REGMRMRAPEYSTPEIYQIMLDCWHRDPKERPRFAELVEKL 1266 PF07714.7.ls: domain 1 of 1, from 939 to 1266: score 526.6, E = 2.5e-155 *->lklgkkLGeGaFGeVykGtlkg.sgdgteikVAVKtLkeigaseeei lklgk LG+GaFG+V+++ ++g +++ t+ +VAVK+Lke ga+ +e ef05920s1 939 LKLGKSLGRGAFGKVVQASAFGiKKSPTCRTVAVKMLKE-GATASE- 983 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd ++++ E++i++++G+H N+V+LlG+ctk+g+P l++++Ey+++G+ ef05920s1 984 -YKALMTELKILTHIGHHLNVVNLLGACTKQGGP----LMVIVEYCKYGN 1028 LldfLrkhr......................................... L ++L+++r+ +++ + ++++++ +++ +++++++ ++ +++++ ef05920s1 1029 LSNYLKSKRdlfflnkdaalhmepkkekmepgleqgkkprldsvtssesf 1078 .......................egrpLtlkdLlsfalQiAkGMeYLesk +++ +++++ ++ ++++++++ ++p+t++dL+s+++Q+A+GMe+L+s+ ef05920s1 1079 assgfqedkslsdveeeedsdgfYKEPITMEDLISYSFQVARGMEFLSSR 1128 nfvHRDLAARNcLVsenlvVKIsDFGLaRdiynddyYvrkkgggklPvkW +++HRDLAARN+L+sen+vVKI+DFGLaRdiy+ Y + kg+++lP kW ef05920s1 1129 KCIHRDLAARNILLSENNVVKICDFGLARDIYKNPDY-VRKGDTRLPLKW 1177 mAPEslkygkFtskSDVWSFGVlLWEiftlGeqPFYpgm.sneevlelly mAPEs++++++++kSDVWS+GVlLWEif+lG++P Ypg++ +e+++ +l ef05920s1 1178 MAPESIFDKIYSTKSDVWSYGVLLWEIFSLGGSP-YPGVqMDEDFCSRL- 1225 edGyRLprPenCPdelYdlMlqCWaedPedRPtFselveeL<-* ++G R+ +Pe+ ++e+Y++Ml+CW++dP++RP+F+elve+L ef05920s1 1226 REGMRMRAPEYSTPEIYQIMLDCWHRDPKERPRFAELVEKL 1266 PF00069.15.ls: domain 1 of 1, from 939 to 1266: score 152.0, E = 1.5e-42 *->yelleklGsGsfGtV.....ykakhkgtgkiVAvKiikkrkekskkd ++l++ lG+G+fG+V + + + k+ t+++VAvK +k + s + ef05920s1 939 LKLGKSLGRGAFGKVvqasaFGIKKSPTCRTVAVKMLKEGATAS--E 983 ktarrlsEiqilkrL.sHpNIvrlidvfed.kdhlylVlEycegGLrvld + a+ + E++il ++++H N+v l+++++ +++ l ++ Eyc G ef05920s1 984 YKALMT-ELKILTHIgHHLNVVNLLGACTKqGGPLMVIVEYCKYG----N 1028 Lfdyls............................................ L+ yl+++++ +++ + ++++++ +++ +++++++ ++ +++++ ef05920s1 1029 LSNYLKskrdlfflnkdaalhmepkkekmepgleqgkkprldsvtssesf 1078 .................e...trrkgpllfsedeakkialQilrgleYLH +++ +++++ ++ +++e+++ +k p+ ++++++++ Q++rg+e+L ef05920s1 1079 assgfqedkslsdveeeEdsdGFYKEPI--TMEDLISYSFQVARGMEFLS 1126 sngiiHRDLKPeNILldnngvvdaflKiaDFGlAkkls.t.sss.lttfv s+++iHRDL NILl++n+vv Ki+DFGlA+ +++++ +++ + ef05920s1 1127 SRKCIHRDLAARNILLSENNVV----KICDFGLARDIYkNpDYVrKGDTR 1172 GTpwYmAPEvllggngygtkvDvWSlGvilyellt.GkpPFsgevqdsld + +mAPE + ++ y+tk+DvWS+Gv+l+e ++ G P++g d ef05920s1 1173 LPLKWMAPESIF-DKIYSTKSDVWSYGVLLWEIFSlGGSPYPGV---QMD 1218 qlqlirkilgpplefdspewdsisrsefrrlpnlseeakdLikkcLnkDP ++++ r++ g + + +++ + +e +++ +c+++DP ef05920s1 1219 EDFCSRLREGMRMRAPEYST---------------PEIYQIMLDCWHRDP 1253 skRltaeeilqHPwf<-* ++R+ ++e+++ + ef05920s1 1254 KERPRFAELVEK--L 1266 PF00069.15.fs: domain 2 of 2, from 1105 to 1266: score 113.7, E = 3.6e-32 *->pllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngvvd p+ ++++++++ Q++rg+e+L s+++iHRDL NILl++n+vv ef05920s1 1105 PI--TMEDLISYSFQVARGMEFLSSRKCIHRDLAARNILLSENNVV- 1148 aflKiaDFGlAkkls.t.sss.lttfvGTpwYmAPEvllggngygtkvDv Ki+DFGlA+ +++++ +++ + + +mAPE + ++ y+tk+Dv ef05920s1 1149 ---KICDFGLARDIYkNpDYVrKGDTRLPLKWMAPESIF-DKIYSTKSDV 1194 WSlGvilyellt.GkpPFsgevqdsldqlqlirkilgpplefdspewdsi WS+Gv+l+e ++ G P++g d++++ r++ g + + +++ + ef05920s1 1195 WSYGVLLWEIFSlGGSPYPGV---QMDEDFCSRLREGMRMRAPEYST--- 1238 srsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* +e +++ +c+++DP++R+ ++e+++ + ef05920s1 1239 ------------PEIYQIMLDCWHRDPKERPRFAELVEK--L 1266 //