hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20090626/iprscan-20090626-09414324/chunk_1/iprscan-20090626-09414324.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ef05920s1 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00219 493.5 1e-143 1 SM00409 237.1 1.4e-66 7 SM00408 151.9 6.7e-41 5 SM00220 114.3 1.4e-29 1 SM00406 27.6 0.0018 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00409 1/7 150 241 .. 1 58 [] 14.6 4.4 SM00409 2/7 255 336 .. 1 58 [] 26.3 0.0042 SM00408 1/5 261 326 .. 1 56 [] 11.5 0.35 SM00409 3/7 349 441 .. 1 58 [] 49.5 4.3e-10 SM00408 2/5 355 430 .. 1 56 [] 21.2 0.034 SM00406 1/2 359 425 .. 1 76 [] 9.0 0.37 SM00409 4/7 456 537 .. 1 58 [] 27.9 0.0014 SM00408 3/5 460 524 .. 1 56 [] 5.2 1.6 SM00409 5/7 551 665 .. 1 58 [] 14.5 4.5 SM00409 6/7 674 770 .. 1 58 [] 40.0 3.3e-07 SM00408 4/5 680 755 .. 1 56 [] 36.2 4.6e-06 SM00406 2/2 684 750 .. 1 76 [] 18.6 0.041 SM00409 7/7 779 861 .. 1 58 [] 64.4 1.5e-14 SM00408 5/5 785 850 .. 1 56 [] 77.8 1.4e-18 SM00219 1/1 939 1266 .. 1 280 [] 493.5 1e-143 SM00220 1/1 939 1270 .. 1 231 [] 114.3 1.4e-29 Alignments of top-scoring domains: SM00409: domain 1 of 7, from 150 to 241: score 14.6, E = 4.4 *->pp.vtvkeGesvtLtC.as.titWy...................... ++ ++G+++ L+C+ + +W+ + ++ + + + +++ +++ ef05920s1 150 GTqHIMQAGQTLHLQCrGEaAHKWSlpemvskeserlsitksacgrn 196 .......LtI.nvtpeDsesgGtYtCaat......sgsasseqgttLtVl +++ ++Lt++ ++++++ G Y C +++++++++s +++ ++ ef05920s1 197 gkqfcstLTLnTAQANHT---GFYSCKYLavptskKKETES--AIYIFIS 241 <-* ef05920s1 - - SM00409: domain 2 of 7, from 255 to 336: score 26.3, E = 0.0042 *->pp.vtvkeGesvtLtC.as....titWy................... p+ + eG ++++C++++++ t+t+++ + ++ +++++ +++ ef05920s1 255 PEiIHMTEGRELVIPCrVTspniTVTLKkfpldtlipdgkriiwdsr 301 ..LtI.nvtpeDsesgGtYtCaat.sgsasseqgttLtVl<-* ++++I+n+t+ G tC+at +g ++ + +Lt + ef05920s1 302 kgFIIsNATYKEI---GLLTCEATvNGHLYK--TNYLTHR 336 SM00408: domain 1 of 5, from 261 to 326: score 11.5, E = 0.35 *->leGqsVtLtCpasgdpvpnItWlk...gkplp........sgstLti eG+ ++++C+ +p+ ++t +k + ++ +p++++ +s++ i ef05920s1 261 TEGRELVIPCR-VTSPNITVTLKKfplDTLIPdgkriiwdSRKGFII 306 knvsleDsGlYtCvArNsvg<-* +n+++ Gl tC+A+ + + ef05920s1 307 SNATYKEIGLLTCEATVNGH 326 SM00409: domain 3 of 7, from 349 to 441: score 49.5, E = 4.3e-10 *->pp.vtvkeGesvtLtC.as.......titWy................ p++v +G +++L+C+a+++ ++ ++tW+ ++ ++++ + +++ + ef05920s1 349 PRpVKLLRGHTLVLNCtATtplntrvQMTWSypdeknkrasvrrrid 395 ............LtI.nvtpeDsesgGtYtCaat.sgsasseqgttLtVl +++++ + + LtI++ + D G YtC+++++ s +s +t ++++ ef05920s1 396 qsnshanifysvLTIdKMQNKDK---GLYTCRVRsGPSFKS-VNTSVHIY 441 <-* ef05920s1 - - SM00408: domain 2 of 5, from 355 to 430: score 21.2, E = 0.034 *->leGqsVtLtCpas..gdpvpnItWlk.gkplp............... l G +++L+C a+++ + + tW +++++ + + +++ ++++++ ef05920s1 355 LRGHTLVLNCTATtpLNTRVQMTWSYpDEKNKrasvrrridqsnsha 401 ..sgstLtiknvsleDsGlYtCvArNsvg<-* + s Lti ++ D GlYtC++r+ + ef05920s1 402 niFYSVLTIDKMQNKDKGLYTCRVRSGPS 430 SM00406: domain 1 of 2, from 359 to 425: score 9.0, E = 0.37 *->svtLsCkaSgftf...yvsWvrqpPsstgkgkglewlgysykgRvti ++ L C+a++ +++ +++W + k k+ s++ R+ ef05920s1 359 TLVLNCTATTPLNtrvQMTWSYPDE----KNKRA-----SVRRRIDQ 396 skdtltraskndvs..LtisnLrpeDtgtYyCar<-* s + n +++ Lti ++ +D g Y+C + ef05920s1 397 SNS-----HANIFYsvLTIDKMQNKDKGLYTCRV 425 SM00409: domain 4 of 7, from 456 to 537: score 27.9, E = 0.0014 *->pp.vtvkeGesvtLtC.as...titWy...................L ++v +k+ +++++ +a +++++ W++++ + + ++ + +++ +L ef05920s1 456 LEtVAGKRSYRLSMKVkAFpspEVVWLkdglpateksaryltrgysL 502 tI.nvtpeDsesgGtYtCaat...sgsasseqgttLtVl<-* +I++vt+eD+ G+Yt + + s + + ++tL+V ef05920s1 503 IIkDVTEEDA---GNYTILLSikqSNVFKN-LTATLIVN 537 SM00408: domain 3 of 5, from 460 to 524: score 5.2, E = 1.6 *->leGqsVtLtCpasgdpvpnItWlk.gkplp........sgstLtikn +s +L ++ ++p p++ Wlk+g p +++ + + g +L ik+ ef05920s1 460 AGKRSYRLSMKVKAFPSPEVVWLKdGLPATeksaryltRGYSLIIKD 506 vsleDsGlYtCvArNsvg<-* v++eD+G+Yt + + + + ef05920s1 507 VTEEDAGNYTILLSIKQS 524 SM00409: domain 5 of 7, from 551 to 665: score 14.5, E = 4.5 *->pp.vtvkeGesvtLtC.as.....titWy.................. p + + +G++ LtC+a + + +ti+W+ ++ +++++ + + ++ ef05920s1 551 PDpALYPLGSRQILTCtAYgipqpTIKWFwhpcnhnhsearcdfcsn 597 ....................................LtI.nvtpeDsesg + + + +++ +++ + +++ ++++ ++L++ + + + ef05920s1 598 neesfildadsnmgnriesitqrmaiiegknkmastLVVaDSRIS----- 642 GtYtCaat..sgsasseqgttLtVl<-* G+Y C a+++ g++ ++ +++ ef05920s1 643 GIYICIASnkVGTVGR--NISFYIT 665 SM00409: domain 6 of 7, from 674 to 770: score 40.0, E = 3.3e-07 *->pp.vtvkeGesvtLtC.as.....titWy.................. + eGe+++L+C++++ +tW ++ ++++ + + ++++ ef05920s1 674 NLeKMPTEGEDLKLSCtVNkflyrDVTWIllrtvnnrtmhysiskqk 720 ............LtI.nvtpeDsesgGtYtCaat......sgsasseqgt ++ ++ + +LtI nv+++Ds GtY C+a++ ++ +++ ++ ef05920s1 721 maitkehsitlnLTImNVSLQDS---GTYACRARnvytgeEILQKK--EI 765 tLtVl<-* t++ + ef05920s1 766 TIRDQ 770 SM00408: domain 4 of 5, from 680 to 755: score 36.2, E = 4.6e-06 *->leGqsVtLtCpasgdpvpnItWlk.gkplp................. eG+++ L C ++ + ++tW+ + +++ + + ++++ +++ ef05920s1 680 TEGEDLKLSCTVNKFLYRDVTWILlRTVNNrtmhysiskqkmaitke 726 ..sgstLtiknvsleDsGlYtCvArNsvg<-* ++ Lti nvsl DsG+Y+C+ArN ef05920s1 727 hsITLNLTIMNVSLQDSGTYACRARNVYT 755 SM00406: domain 2 of 2, from 684 to 750: score 18.6, E = 0.041 *->svtLsCkaSgftf.yvsWvrqpPsstgkgkglewlgy.sykgRvtis +++LsC++ f ++ v+W+ + + ++y+ +k + i+ ef05920s1 684 DLKLSCTVNKFLYrDVTWILLR------TVNNRTMHYsISKQKMAIT 724 kdtltraskndvsLtisnLrpeDtgtYyCar<-* k + + Lti+n+ D+gtY C ef05920s1 725 KE-----HSITLNLTIMNVSLQDSGTYACRA 750 SM00409: domain 7 of 7, from 779 to 861: score 64.4, E = 1.5e-14 *->pp.vtvkeGesvtLtC.as.....titWy.................. +++tv +s tL C+a++ + ++itW++++++ ++ ++ ++++ ef05920s1 779 LSdHTVAISSSTTLDChANgvpepQITWFknnhkiqqepgiilgpgs 825 ..LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++L I++vt+eD+ G+Y C at+ +gs++s +++LtV+ ef05920s1 826 stLFIeRVTEEDE---GVYHCKATnqKGSVES--SAYLTVQ 861 SM00408: domain 5 of 5, from 785 to 850: score 77.8, E = 1.4e-18 *->leGqsVtLtCpasgdpvpnItWlk.gkplp.........sgstLtik + s tL C+a+g p+p+ItW+k++ +++++++ ++++stL i+ ef05920s1 785 AISSSTTLDCHANGVPEPQITWFKnNHKIQqepgiilgpGSSTLFIE 831 nvsleDsGlYtCvArNsvg<-* +v++eD+G+Y+C+A+N +g ef05920s1 832 RVTEEDEGVYHCKATNQKG 850 SM00219: domain 1 of 1, from 939 to 1266: score 493.5, E = 1e-143 *->ltlgkkLGeGaFGeVykGtlk........ieVAVKtLkeda....ke l+lgk LG+GaFG+V+++ + + +++++ ++VAVK+Lke+a+ ++ + ef05920s1 939 LKLGKSLGRGAFGKVVQASAFgikksptcRTVAVKMLKEGAtaseYK 985 eFlrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGd +++ E+ki++++G +H N+V+LlG+ct++g +Plm+++Ey+++G+ ef05920s1 986 ALMTELKILTHIG-HHLNVVNLLGACTKQG------GPLMVIVEYCKYGN 1028 LldyLrknrpk....................................... L +yL+++r+ +++ + ++++++ +++ +++++++ ++ +++++ ef05920s1 1029 LSNYLKSKRDLfflnkdaalhmepkkekmepgleqgkkprldsvtssesf 1078 ...........................lslsdLlsfAlQIAkGMeYLesk +++ +++++ ++ ++++++++ +++++++dL+s+++Q+A+GMe+L+s+ ef05920s1 1079 assgfqedkslsdveeeedsdgfykepITMEDLISYSFQVARGMEFLSSR 1128 nfvHRDLAARNcLvgenkvvKIsDFGLsRdlyddDkkGeskdyYrkkggk +++HRDLAARN+L++en+vvKI+DFGL+Rd+y dy rk ef05920s1 1129 KCIHRDLAARNILLSENNVVKICDFGLARDIYKN------PDYVRKG--- 1169 ggktllPirWmAPEslkdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiq +++ lP++WmAPEs++d+++++kSDVWS+GVlLWEif+lG++PYpg+ ef05920s1 1170 DTR--LPLKWMAPESIFDKIYSTKSDVWSYGVLLWEIFSLGGSPYPGV-- 1215 qfmsneevleylkkGyRlpkPendlpiSsvtCPdelYdlMlqCWaedPed +e+ +l++G+R++ Pe+ ++e+Y++Ml+CW++dP++ ef05920s1 1216 --QMDEDFCSRLREGMRMRAPEY--------STPEIYQIMLDCWHRDPKE 1255 RPtFselverl<-* RP+F+elve+l ef05920s1 1256 RPRFAELVEKL 1266 SM00220: domain 1 of 1, from 939 to 1270: score 114.3, E = 1.4e-29 *->YellkklGkGaFGkVylardkk.....tgrlvAiKvik........e +l+k lG+GaFGkV +a + ++++t r vA+K++k++ + ++ + ef05920s1 939 LKLGKSLGRGAFGKVVQASAFGikkspTCRTVAVKMLKegataseyK 985 rilrEikiLkk..dHPNIVkLydvfed..dklylVmEyceGdlGdLfdll ++ E+kiL + ++H N+V+L++++ +++ l ++ Eyc G+L +l ef05920s1 986 ALMTELKILTHigHHLNVVNLLGACTKqgGPLMVIVEYCKY--GNLSNYL 1033 kkrgrrg........................................... k+++ +++ + ++++++ +++ +++++++ ++ +++++ +++ ef05920s1 1034 KSKRDLFflnkdaalhmepkkekmepgleqgkkprldsvtssesfassgf 1083 ..................lrkvlsE.earfyfrQilsaLeYLHsqgIiHR +++++ ++ ++++++++ ++ +++ ++ +y Q+++++e+L s++ iHR ef05920s1 1084 qedkslsdveeeedsdgfYKEPITMeDLISYSFQVARGMEFLSSRKCIHR 1133 DLKPeNiLLds..hvKlaDFGlArql.........ttfvGTpeYmAPEvl DL NiLL+++++vK++DFGlAr + ++++ ++ + +mAPE + ef05920s1 1134 DLAARNILLSEnnVVKICDFGLARDIyknpdyvrkGDTRLPLKWMAPESI 1183 ...gYgkpavDiWSlGcilyEllt.GkpPFp..qldlifkkig....... ++ Y++ ++D+WS G++l+E ++ G P+p+ q+d+ f ++++ + + ef05920s1 1184 fdkIYST-KSDVWSYGVLLWEIFSlGGSPYPgvQMDEDFCSRLregmrmr 1232 .....SpeakdLikklLvkdPekRlta.eaLedeldikaHPff<-* +++++pe +++ ++++dP++R+ e+ e k+ + ef05920s1 1233 apeysTPEIYQIMLDCWHRDPKERPRFaELVE-----KLGDLL 1270 //