hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-11591707/chunk_1/iprscan-20080808-11591707.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ef06057 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00431.11.fs CUB domain 1300.3 0 12 PF00431.11.ls CUB domain 1273.5 0 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00431.11.fs 2/12 97 209 .. 1 116 [] 144.6 1.5e-43 PF00431.11.ls 1/10 97 209 .. 1 116 [] 146.6 6e-41 PF00431.11.ls 2/10 216 322 .. 1 116 [] 142.0 1.5e-39 PF00431.11.fs 3/12 216 322 .. 1 116 [] 140.0 3.6e-42 PF00431.11.fs 4/12 326 434 .. 1 113 [. 155.8 6.2e-47 PF00431.11.ls 3/10 326 437 .. 1 116 [] 157.2 4.1e-44 PF00431.11.fs 5/12 444 553 .. 1 116 [] 122.1 1e-36 PF00431.11.ls 4/10 444 553 .. 1 116 [] 124.1 3.7e-34 PF00431.11.ls 5/10 560 666 .. 1 116 [] 74.8 2.6e-19 PF00431.11.fs 6/12 567 666 .. 12 116 .] 75.9 1.1e-22 PF00431.11.fs 7/12 684 794 .. 1 116 [] 146.4 4.4e-44 PF00431.11.ls 6/10 684 794 .. 1 116 [] 148.3 1.9e-41 PF00431.11.fs 8/12 798 916 .. 1 116 [] 102.1 1.2e-30 PF00431.11.ls 7/10 798 916 .. 1 116 [] 104.1 3.9e-28 PF00431.11.fs 9/12 923 1037 .. 1 116 [] 125.7 8.1e-38 PF00431.11.ls 8/10 923 1037 .. 1 116 [] 127.7 3e-35 PF00431.11.fs 10/12 1042 1151 .. 1 116 [] 129.5 5.7e-39 PF00431.11.ls 9/10 1042 1151 .. 1 116 [] 131.5 2.2e-36 PF00431.11.fs 11/12 1158 1268 .. 1 116 [] 115.4 1.1e-34 PF00431.11.ls 10/10 1158 1268 .. 1 116 [] 117.3 3.9e-32 PF00431.11.fs 12/12 1276 1326 .. 1 50 [. 28.9 1.9e-08 Alignments of top-scoring domains: PF00431.11.fs: domain 2 of 12, from 97 to 209: score 144.6, E = 1.5e-43 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg+ l ++Gs++SP++Pn YppnkeC+W Ir+ pg++ i+Lt+ ef06057 97 CGGE--LSGATGSFSSPGFPN-RYPPNKECIWYIRTDPGSS-IQLTI 139 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCG..gsgiPedirStsn +dFd+E+h + C+ D++Ei+ G++ +sp ++ C ++ ++P++++St+n ef06057 140 HDFDVEYHSR-CNFDVLEIYGGPDFHSPRIAQLCTqrSPENPMQVSSTGN 188 qmtikFvsDssiqkrGFkaty<-* + i+F++D si++rGF+a+ ef06057 189 ELAIRFKTDLSINGRGFNASW 209 PF00431.11.ls: domain 1 of 10, from 97 to 209: score 146.6, E = 6e-41 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg+ l ++Gs++SP++Pn YppnkeC+W Ir+ pg++ i+Lt+ ef06057 97 CGGE--LSGATGSFSSPGFPN-RYPPNKECIWYIRTDPGSS-IQLTI 139 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCG..gsgiPedirStsn +dFd+E+h + C+ D++Ei+ G++ +sp ++ C ++ ++P++++St+n ef06057 140 HDFDVEYHSR-CNFDVLEIYGGPDFHSPRIAQLCTqrSPENPMQVSSTGN 188 qmtikFvsDssiqkrGFkaty<-* + i+F++D si++rGF+a+ ef06057 189 ELAIRFKTDLSINGRGFNASW 209 PF00431.11.ls: domain 2 of 10, from 216 to 322: score 142.0, E = 1.5e-39 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg+ + ++sG+I+SPnYP+ pY+ n++C W Ir+ ++r + L+F ef06057 216 CGGI--FQAPSGEIHSPNYPS-PYRSNTDCSWVIRVDRNHR-VLLNF 258 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm +dFdlE++d+ C + +DGl+s+ l+r CG +++ +i+S++n++ ef06057 259 TDFDLESQDS-C----IMAYDGLSSTMSRLARTCGREQLANPIVSSGNSL 303 tikFvsDssiqkrGFkaty<-* +++F+s s q+rGF+a + ef06057 304 FLRFQSGPSRQNRGFRAQF 322 PF00431.11.fs: domain 3 of 12, from 216 to 322: score 140.0, E = 3.6e-42 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg+ + ++sG+I+SPnYP+ pY+ n++C W Ir+ ++r + L+F ef06057 216 CGGI--FQAPSGEIHSPNYPS-PYRSNTDCSWVIRVDRNHR-VLLNF 258 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm +dFdlE++d+ C + +DGl+s+ l+r CG +++ +i+S++n++ ef06057 259 TDFDLESQDS-C----IMAYDGLSSTMSRLARTCGREQLANPIVSSGNSL 303 tikFvsDssiqkrGFkaty<-* +++F+s s q+rGF+a + ef06057 304 FLRFQSGPSRQNRGFRAQF 322 PF00431.11.fs: domain 4 of 12, from 326 to 434: score 155.8, E = 6.2e-47 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg++ lt+s + +SP +P +Yp+n++C W+I+a+p + i+L+F ef06057 326 CGGHI-LTSSFDTVSSPRFPA-NYPNNQNCSWIIQAQPPLNHITLSF 370 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm ++F+lE+++ C+ D+VEi DG ++++pl+Gr+CG P +i+S+s+++ ef06057 371 THFELERSTT-CARDFVEILDGGHEDAPLRGRYCG-TDMPHPITSFSSAL 418 tikFvsDssiqkrGFk<-* t++FvsDssi+++GF+ ef06057 419 TLRFVSDSSISAGGFH 434 PF00431.11.ls: domain 3 of 10, from 326 to 437: score 157.2, E = 4.1e-44 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg++ lt+s + +SP +P +Yp+n++C W+I+a+p + i+L+F ef06057 326 CGGHI-LTSSFDTVSSPRFPA-NYPNNQNCSWIIQAQPPLNHITLSF 370 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm ++F+lE+++ C+ D+VEi DG ++++pl+Gr+CG P +i+S+s+++ ef06057 371 THFELERSTT-CARDFVEILDGGHEDAPLRGRYCG-TDMPHPITSFSSAL 418 tikFvsDssiqkrGFkaty<-* t++FvsDssi+++GF+ t ef06057 419 TLRFVSDSSISAGGFHTTV 437 PF00431.11.fs: domain 5 of 12, from 444 to 553: score 122.1, E = 1e-36 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg+ + + G + SP+YP+ Yppn+eCvW I+ pg r +L+F ef06057 444 CGGT--FYMAEGIFNSPGYPD-IYPPNVECVWNIVSSPGNR-LQLSF 486 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm +F lEd+++ C D+VEir+G ++ l+Gr+CG+s + + ++++ ef06057 487 ISFQLEDSQD-CSRDFVEIREGNA-TGHLVGRYCGNSFPLNYSSIVGHTL 534 tikFvsDssiqkrGFkaty<-* +++F+sD+s ++ GF+at+ ef06057 535 WVRFISDGSGSGTGFQATF 553 PF00431.11.ls: domain 4 of 10, from 444 to 553: score 124.1, E = 3.7e-34 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg+ + + G + SP+YP+ Yppn+eCvW I+ pg r +L+F ef06057 444 CGGT--FYMAEGIFNSPGYPD-IYPPNVECVWNIVSSPGNR-LQLSF 486 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm +F lEd+++ C D+VEir+G ++ l+Gr+CG+s + + ++++ ef06057 487 ISFQLEDSQD-CSRDFVEIREGNA-TGHLVGRYCGNSFPLNYSSIVGHTL 534 tikFvsDssiqkrGFkaty<-* +++F+sD+s ++ GF+at+ ef06057 535 WVRFISDGSGSGTGFQATF 553 PF00431.11.ls: domain 5 of 10, from 560 to 666: score 74.8, E = 2.6e-19 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF ++ + + G +SP +P+ +Yp n++ +Wt++++ + ++ ++ ef06057 560 --DN--IVGTHGKVASPFWPE-NYPHNSNYQWTVNVNASHV-VHGRI 600 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm +++d+E+ ++ C+YD + i+DG++ ++ l+G +CG e + St+n++ ef06057 601 LEMDIEEIQN-CYYDKLRIYDGPSIHARLIGAYCG--TQTESFGSTGNSL 647 tikFvsDssiqkrGFkaty<-* t+ F+sDssi+++GF + ef06057 648 TFHFYSDSSISGKGFLLEW 666 PF00431.11.fs: domain 6 of 12, from 567 to 666: score 75.9, E = 1.1e-22 *->GsItSPnYPnrpYppnkeCvWtIrappgyrvisLtFqdFdlEdhdga G +SP +P+ +Yp n++ +Wt++++ + ++ +++++d+E+ ++ ef06057 567 GKVASPFWPE-NYPHNSNYQWTVNVNASHV-VHGRILEMDIEEIQN- 610 CgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqmtikFvsDssiq C+YD + i+DG++ ++ l+G +CG e + St+n++t+ F+sDssi+ ef06057 611 CYYDKLRIYDGPSIHARLIGAYCG--TQTESFGSTGNSLTFHFYSDSSIS 658 krGFkaty<-* ++GF + ef06057 659 GKGFLLEW 666 PF00431.11.fs: domain 7 of 12, from 684 to 794: score 146.4, E = 4.4e-44 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg l+ +++ + SP++P+ +Y++ ++C+W+I+ap ++L++ ef06057 684 CGGFLRTGDAPVFLFSPGWPD-SYSNRVDCTWLIQAPDST--VELNI 727 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm +++d+E+h+ C+YD++ irDG+ + +++l+ CG +iP++irSt+ m ef06057 728 LSLDIESHRT-CAYDSLVIRDGDNNLAQQLAVLCG-REIPGPIRSTGEYM 775 tikFvsDssiqkrGFkaty<-* +i+F+sDss++++GF+a++ ef06057 776 FIRFTSDSSVTRAGFNASF 794 PF00431.11.ls: domain 6 of 10, from 684 to 794: score 148.3, E = 1.9e-41 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg l+ +++ + SP++P+ +Y++ ++C+W+I+ap ++L++ ef06057 684 CGGFLRTGDAPVFLFSPGWPD-SYSNRVDCTWLIQAPDST--VELNI 727 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm +++d+E+h+ C+YD++ irDG+ + +++l+ CG +iP++irSt+ m ef06057 728 LSLDIESHRT-CAYDSLVIRDGDNNLAQQLAVLCG-REIPGPIRSTGEYM 775 tikFvsDssiqkrGFkaty<-* +i+F+sDss++++GF+a++ ef06057 776 FIRFTSDSSVTRAGFNASF 794 PF00431.11.fs: domain 8 of 12, from 798 to 916: score 102.1, E = 1.2e-30 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg+ l + G ItSP YP+ Yp n +C W++ ++ g + i +F ef06057 798 CGGY--LHADRGIITSPKYPE-TYPSNLNCSWHVLVQSGLT-IAVHF 840 qd.FdlEdhdga.CgYDyVEirDGlpssspllGr......fCGgsgiPed +++F + + d+ + Dy+ r G++ +sp lG+++++++fCG s++ + ef06057 841 EQpFQIPNGDSScNQGDYLVLRNGPDIYSPPLGPpggnghFCG-SHASST 889 irStsnqmtikFvsDssiqkrGFkaty<-* +++nqm++ F+sD s+ + GFk++y ef06057 890 LFTSDNQMFVQFISDHSNEGQGFKIKY 916 PF00431.11.ls: domain 7 of 10, from 798 to 916: score 104.1, E = 3.9e-28 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg+ l + G ItSP YP+ Yp n +C W++ ++ g + i +F ef06057 798 CGGY--LHADRGIITSPKYPE-TYPSNLNCSWHVLVQSGLT-IAVHF 840 qd.FdlEdhdga.CgYDyVEirDGlpssspllGr......fCGgsgiPed +++F + + d+ + Dy+ r G++ +sp lG+++++++fCG s++ + ef06057 841 EQpFQIPNGDSScNQGDYLVLRNGPDIYSPPLGPpggnghFCG-SHASST 889 irStsnqmtikFvsDssiqkrGFkaty<-* +++nqm++ F+sD s+ + GFk++y ef06057 890 LFTSDNQMFVQFISDHSNEGQGFKIKY 916 PF00431.11.fs: domain 9 of 12, from 923 to 1037: score 125.7, E = 8.1e-38 *->CGgvldltess..GsItSPnYPnrpYppnkeCvWtIrappgyrvisL CGg++ + ++++ G+ tSPn P+ +Ypp+++C+W++ app+ r i+L ef06057 923 CGGNVYIHDADsaGYVTSPNHPH-NYPPHADCIWILAAPPETR-IQL 967 tFqd.FdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirSts +F+d+Fd+E +++ C y+E rDG +s++p+l +fCG +P S++ ef06057 968 QFEDrFDIEVTPN-CTSNYLELRDGVDSDAPILSKFCG-TSLPSSQWSSG 1015 nqmtikFvsDssiqkrGFkaty<-* m+++F sD+s + GFka+y ef06057 1016 EVMYLRFRSDNSPTHVGFKAKY 1037 PF00431.11.ls: domain 8 of 10, from 923 to 1037: score 127.7, E = 3e-35 *->CGgvldltess..GsItSPnYPnrpYppnkeCvWtIrappgyrvisL CGg++ + ++++ G+ tSPn P+ +Ypp+++C+W++ app+ r i+L ef06057 923 CGGNVYIHDADsaGYVTSPNHPH-NYPPHADCIWILAAPPETR-IQL 967 tFqd.FdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirSts +F+d+Fd+E +++ C y+E rDG +s++p+l +fCG +P S++ ef06057 968 QFEDrFDIEVTPN-CTSNYLELRDGVDSDAPILSKFCG-TSLPSSQWSSG 1015 nqmtikFvsDssiqkrGFkaty<-* m+++F sD+s + GFka+y ef06057 1016 EVMYLRFRSDNSPTHVGFKAKY 1037 PF00431.11.fs: domain 10 of 12, from 1042 to 1151: score 129.5, E = 5.7e-39 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg+ + sG+ S + P pY++n +C+W+++ g+ +++F ef06057 1042 CGGR--VPGQSGVVESIGHPTLPYRDNLFCEWHLQGLSGHY-LTISF 1085 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm +dF+l+++ g C +D+VEi+D + s +lGr+CG iP+ i ++sn+ ef06057 1086 EDFNLQNSSG-CEKDFVEIWDNHTSG-NILGRYCG-NTIPDSIDTSSNTA 1132 tikFvsDssiqkrGFkaty<-* ++Fv+D+s++++GF++++ ef06057 1133 VVRFVTDGSVTASGFRLRF 1151 PF00431.11.ls: domain 9 of 10, from 1042 to 1151: score 131.5, E = 2.2e-36 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg+ + sG+ S + P pY++n +C+W+++ g+ +++F ef06057 1042 CGGR--VPGQSGVVESIGHPTLPYRDNLFCEWHLQGLSGHY-LTISF 1085 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm +dF+l+++ g C +D+VEi+D + s +lGr+CG iP+ i ++sn+ ef06057 1086 EDFNLQNSSG-CEKDFVEIWDNHTSG-NILGRYCG-NTIPDSIDTSSNTA 1132 tikFvsDssiqkrGFkaty<-* ++Fv+D+s++++GF++++ ef06057 1133 VVRFVTDGSVTASGFRLRF 1151 PF00431.11.fs: domain 11 of 12, from 1158 to 1268: score 115.4, E = 1.1e-34 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg+ l s G++tSPnYPn p p C+W+I+ap+g r i+L F ef06057 1158 CGGD--LQGSIGTFTSPNYPN-PNPHGRICEWRITAPEGRR-ITLMF 1200 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgs..giPedirStsn + l h++ C+ ++V ++ G +s+sp+l + C s+ + i+S++n ef06057 1201 NNLRLATHPS-CNNEHVIVFNGIRSNSPQLEKLC--SsvNVSNEIKSSGN 1247 qmtikFvsDssiqkrGFkaty<-* +m ++F +D+s ++GF a+y ef06057 1248 TMKVIFFTDGSRPYGGFTASY 1268 PF00431.11.ls: domain 10 of 10, from 1158 to 1268: score 117.3, E = 3.9e-32 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg+ l s G++tSPnYPn p p C+W+I+ap+g r i+L F ef06057 1158 CGGD--LQGSIGTFTSPNYPN-PNPHGRICEWRITAPEGRR-ITLMF 1200 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgs..giPedirStsn + l h++ C+ ++V ++ G +s+sp+l + C s+ + i+S++n ef06057 1201 NNLRLATHPS-CNNEHVIVFNGIRSNSPQLEKLC--SsvNVSNEIKSSGN 1247 qmtikFvsDssiqkrGFkaty<-* +m ++F +D+s ++GF a+y ef06057 1248 TMKVIFFTDGSRPYGGFTASY 1268 PF00431.11.fs: domain 12 of 12, from 1276 to 1326: score 28.9, E = 1.9e-08 *->CGgvldltessGsItSPnYPn.rpYppnkeCvWtIrappgyrv.isL CGg l ++ G++tSP+Y r+Y++n +C+Wt++ p + + +is+ ef06057 1276 CGGSL-PNTPEGNFTSPGYDGvRNYSRNLNCEWTLSNPNQGNSsISI 1321 tFqdF<-* +F+dF ef06057 1322 HFEDF 1326 //