hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-11591707/chunk_1/iprscan-20080808-11591707.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ef06057 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00042 1351.2 0 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00042 1/10 97 212 .. 1 144 [] 162.2 5.1e-44 SM00042 2/10 216 325 .. 1 144 [] 134.3 1.3e-35 SM00042 3/10 326 440 .. 1 144 [] 149.6 3.3e-40 SM00042 4/10 444 556 .. 1 144 [] 146.2 3.5e-39 SM00042 5/10 558 669 .. 1 144 [] 100.0 2.8e-25 SM00042 6/10 684 797 .. 1 144 [] 126.9 2.2e-33 SM00042 7/10 798 919 .. 1 144 [] 125.1 7.8e-33 SM00042 8/10 923 1040 .. 1 144 [] 140.7 1.6e-37 SM00042 9/10 1042 1154 .. 1 144 [] 136.2 3.4e-36 SM00042 10/10 1158 1271 .. 1 144 [] 130.1 2.5e-34 Alignments of top-scoring domains: SM00042: domain 1 of 10, from 97 to 212: score 162.2, E = 5.1e-44 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CGg+l +++ G+++SP++Pn Yp+n+eC+W I++ pG ef06057 97 CGGELSGAT------GSFSSPGFPNR-----YPPNKECIWYIRTDPG 132 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG + i+L++ d Fd+E+++ C +D +eiy Gp+ +sp+++ ef06057 133 SSIQLTIHD---FDVEYHSR---------CNFDVLEIYGGPD-FHSPRIA 169 ntearfCGse....p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYs ++C ++++++p +sS++N++ ++F++D s++ +rGF+a+++ ef06057 170 ----QLCTQRspenPmQVSSTGNELAIRFKTDLSIN-----GRGFNASWQ 210 av<-* av ef06057 211 AV 212 SM00042: domain 2 of 10, from 216 to 325: score 134.3, E = 1.3e-35 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CGg++ a+s G+i SPnYP++ Y +n++C+W+I++ + ef06057 216 CGGIFQAPS------GEIHSPNYPSP-----YRSNTDCSWVIRVDRN 251 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG +r+ L+Ftd FdlEs d+ C ++ yDG s + +l+ ef06057 252 HRVLLNFTD---FDLESQDS---------C----IMAYDGLS-STMSRLA 284 ntearfCGse...p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsa r CG e+ ++i+sS +Ns++++F+s +s q +rGF+a+++ ef06057 285 ----RTCGREqlaNpIVSS-GNSLFLRFQSGPSRQ-----NRGFRAQFRQ 324 v<-* ef06057 325 A 325 SM00042: domain 3 of 10, from 326 to 440: score 149.6, E = 3.3e-40 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CGg++++ss + t++SP +P + Ypnn++C+W+I+a p ef06057 326 CGGHILTSS-----FDTVSSPRFPAN-----YPNNQNCSWIIQAQPP 362 y.rieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspll ++i+L+Ft+ F+lE s + C+ D+vei DG +++pl ef06057 363 LnHITLSFTH---FELERSTT---------CARDFVEILDGGH-EDAPLR 399 GntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav G r+CG+ p+ i+S+s+++t++FvsDss++ + GF+ + +a ef06057 400 G----RYCGTDmPhPITSFSSALTLRFVSDSSIS-----AGGFHTTVTAS 440 <-* ef06057 - - SM00042: domain 4 of 10, from 444 to 556: score 146.2, E = 3.5e-39 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CGgt++ ++ G++ SP+YP+ Yp+n eCvW+I+ pG ef06057 444 CGGTFYMAE------GIFNSPGYPDI-----YPPNVECVWNIVSSPG 479 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG +r++L+F + F+lE+s++ C D+vei++G+ +++ l+G ef06057 480 NRLQLSFIS---FQLEDSQD---------CSRDFVEIREGN--ATGHLVG 515 ntearfCGse..p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav r+CG++ + ++ s + +++v+F sD+s++ ++GF+a+++ + ef06057 516 ----RYCGNSfpLnYSSIVGHTLWVRFISDGSGS-----GTGFQATFMKI 556 <-* ef06057 - - SM00042: domain 5 of 10, from 558 to 669: score 100.0, E = 2.8e-25 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG + ++ +++ G + SP +P++ Yp n++ +Wt+ + + ef06057 558 GNDNIVGTH------GKVASPFWPEN-----YPHNSNYQWTVNVNAS 593 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG ++++ ++ + +d+E +n C yD + iyDGps +++l+G ef06057 594 HVVHGRILE---MDIEEIQN---------CYYDKLRIYDGPS-IHARLIG 630 ntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav< +CG++++++ s+ +Ns+t++F sDss++ ++GF + ++av ef06057 631 ----AYCGTQtEsFGST-GNSLTFHFYSDSSIS-----GKGFLLEWFAV 669 -* ef06057 - - SM00042: domain 6 of 10, from 684 to 797: score 126.9, E = 2.2e-33 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CGg l++ + + SP++P+s Y n +C+W+I+ap++ ef06057 684 CGGFLRTGDA----PVFLFSPGWPDS-----YSNRVDCTWLIQAPDS 721 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG +eL++ + +d+Es+++ C+yD + i+DG++ + ++ l+ ef06057 722 T-VELNILS---LDIESHRT---------CAYDSLVIRDGDN-NLAQQLA 757 ntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav< +CG e p+ i+S++ m+++F sDssv+ + GF+a++ ef06057 758 ----VLCGREiPgPIRSTGEYMFIRFTSDSSVT-----RAGFNASFHKS 797 -* ef06057 - - SM00042: domain 7 of 10, from 798 to 919: score 125.1, E = 7.8e-33 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CGg+l a+ G+itSP YP+ Yp+nl+C+W++ + G ef06057 798 CGGYLHADR------GIITSPKYPET-----YPSNLNCSWHVLVQSG 833 yrieLkFtdhdkFdlEssdndgggrfvpeCry.DyveiyDGpsktsspll +i ++F++ F++ + d+ +C ++Dy+ ++Gp+ +sp l ef06057 834 LTIAVHFEQP--FQIPNGDS--------SCNQgDYLVLRNGPD-IYSPPL 872 Gnte..arfCGse..p.iisSssNsmtvtFvsDssvqgkgktkrGFsarY G +++++ fCGs ++++++S N+m+v+F sD s++ ++GF+++Y ef06057 873 GPPGgnGHFCGSHasStLFTS-DNQMFVQFISDHSNE-----GQGFKIKY 916 sav<-* +a ef06057 917 EAK 919 SM00042: domain 8 of 10, from 923 to 1040: score 140.7, E = 1.6e-37 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CGg+++ + D + G++tSPn P + Yp++++C+W++ app ef06057 923 CGGNVYIHDAD--SAGYVTSPNHPHN-----YPPHADCIWILAAPPE 962 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG ri+L+F+d +Fd+E ++n C+ +y+e +DG + ++p l ef06057 963 TRIQLQFED--RFDIEVTPN---------CTSNYLELRDGVD-SDAPILS 1000 ntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav< +fCG++ p+ Ss+ m+++F+sD+s + GF+a+Ys+ ef06057 1001 ----KFCGTSlPsSQWSSGEVMYLRFRSDNSPT-----HVGFKAKYSIA 1040 -* ef06057 - - SM00042: domain 9 of 10, from 1042 to 1154: score 136.2, E = 3.4e-36 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CGg++ + s G+++S + P p Y +nl C+W+++ G ef06057 1042 CGGRVPGQS------GVVESIGHPTLP----YRDNLFCEWHLQGLSG 1078 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG ++++++F+d F+l +s++ C++D+vei+D ++ s+ lG ef06057 1079 HYLTISFED---FNLQNSSG---------CEKDFVEIWDNHT--SGNILG 1114 ntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav< r+CG++ p+ i +ssN++ v+Fv+D+sv+ ++GF++r+++ ef06057 1115 ----RYCGNTiPdSIDTSSNTAVVRFVTDGSVT-----ASGFRLRFESS 1154 -* ef06057 - - SM00042: domain 10 of 10, from 1158 to 1271: score 130.1, E = 2.5e-34 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CGg+l +s Gt+tSPnYPn+ p + C+W+I+ap+G ef06057 1158 CGGDLQGSI------GTFTSPNYPNP-----NPHGRICEWRITAPEG 1193 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG ri+L F + l ++++ C ++v +++G sp l ef06057 1194 RRITLMFNN---LRLATHPS---------CNNEHVIVFNGIR-SNSPQLE 1230 ntearfCGse...p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsa ++C s + +++i sS +N+m v+F++D+s + GF a+Y++ ef06057 1231 ----KLCSSVnvsNeIKSS-GNTMKVIFFTDGSRP-----YGGFTASYTS 1270 v<-* ef06057 1271 S 1271 //