# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Oef06164.fasta.nr -Q ef06164.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ef06164, 191 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6824242 sequences Expectation_n fit: rho(ln(x))= 4.8057+/-0.000185; mu= 10.1977+/- 0.010 mean_var=72.8016+/-13.983, 0's: 52 Z-trim: 52 B-trim: 108 in 1/65 Lambda= 0.150315 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62089348|dbj|BAD93118.1| Cyclin-dependent kinas ( 191) 1334 297.6 6.5e-79 gi|984724|gb|AAB59559.1| cyclin-dependent kinase ( 181) 1267 283.0 1.5e-74 gi|986879|gb|AAB59560.1| cyclin-dependent kinase ( 181) 1259 281.3 4.9e-74 gi|168278004|dbj|BAG10980.1| cyclin-dependent kina ( 164) 1158 259.4 1.8e-67 gi|119624311|gb|EAX03906.1| cyclin-dependent kinas ( 227) 1157 259.3 2.6e-67 gi|12804965|gb|AAH01935.1| Cyclin-dependent kinase ( 164) 1152 258.1 4.4e-67 gi|729143|sp|P38936|CDN1A_HUMAN Cyclin-dependent k ( 164) 1144 256.3 1.5e-66 gi|30584807|gb|AAP36656.1| Homo sapiens cyclin-dep ( 165) 1144 256.3 1.5e-66 gi|117644615|emb|CAL37798.1| hypothetical protein ( 164) 1138 255.0 3.6e-66 gi|90078022|dbj|BAE88691.1| unnamed protein produc ( 164) 1100 246.8 1.1e-63 gi|15822535|gb|AAG15411.1| cyclin-dependent kinase ( 164) 1035 232.7 1.9e-59 gi|109070949|ref|XP_001116823.1| PREDICTED: simila ( 181) 989 222.8 2.1e-56 gi|73972722|ref|XP_532125.2| PREDICTED: similar to ( 208) 973 219.3 2.5e-55 gi|3913223|sp|O19002|CDN1A_FELCA Cyclin-dependent ( 164) 965 217.5 7.1e-55 gi|149732473|ref|XP_001499968.1| PREDICTED: simila ( 164) 953 214.9 4.3e-54 gi|194040412|ref|XP_001929593.1| PREDICTED: simila ( 164) 950 214.3 6.8e-54 gi|148744112|gb|AAI42539.1| CDKN1A protein [Bos ta ( 161) 907 204.9 4.3e-51 gi|148690662|gb|EDL22609.1| cyclin-dependent kinas ( 173) 849 192.4 2.8e-47 gi|1705726|sp|P39689|CDN1A_MOUSE Cyclin-dependent ( 159) 841 190.6 8.7e-47 gi|71059765|emb|CAJ18426.1| Cdkn1a [Mus musculus] ( 159) 831 188.4 3.9e-46 gi|886399|gb|AAC42084.1| p21 protein gi|902582 ( 164) 817 185.4 3.3e-45 gi|51965731|emb|CAH25729.1| putative cyclin-depend ( 132) 796 180.8 6.6e-44 gi|126309929|ref|XP_001378950.1| PREDICTED: simila ( 164) 716 163.5 1.3e-38 gi|3342504|gb|AAC27627.1| cyclin-dependent kinase ( 106) 707 161.4 3.6e-38 gi|186659448|dbj|BAG30921.1| cyclin-cyclin depende ( 76) 393 93.2 9e-18 gi|1002913|gb|AAA91031.1| similar to human p21Sdil ( 56) 285 69.6 8.1e-11 gi|47229638|emb|CAG06834.1| unnamed protein produc ( 187) 289 71.0 1.1e-10 gi|24637682|gb|AAN63876.1|AF513031_1 cdk inhibitor ( 141) 264 65.4 3.7e-09 gi|47230744|emb|CAF99937.1| unnamed protein produc ( 171) 242 60.7 1.2e-07 gi|189542601|ref|XP_001922979.1| PREDICTED: simila ( 169) 238 59.9 2.1e-07 gi|38707292|emb|CAE82383.1| cyclin-dependent kinas ( 136) 231 58.3 5.1e-07 gi|2842411|emb|CAA59284.1| p27 kip1 [Homo sapiens] ( 158) 230 58.1 6.6e-07 gi|4261944|gb|AAD14244.1|1683470_1 cyclin-dependen ( 198) 231 58.4 6.7e-07 gi|12805035|gb|AAH01971.1| Cyclin-dependent kinase ( 198) 231 58.4 6.7e-07 gi|54695972|gb|AAV38358.1| cyclin-dependent kinase ( 199) 231 58.4 6.8e-07 gi|152001124|gb|AAI48068.1| CDKN1B protein [Bos ta ( 198) 225 57.1 1.7e-06 gi|50916199|gb|AAT88078.1| cyclin dependent kinase ( 138) 223 56.5 1.7e-06 gi|60819866|gb|AAX36515.1| cyclin-dependent kinase ( 198) 222 56.5 2.6e-06 gi|1168871|sp|P46527|CDN1B_HUMAN Cyclin-dependent ( 198) 222 56.5 2.6e-06 gi|7769665|gb|AAF69497.1| cyclin-dependent kinase ( 198) 222 56.5 2.6e-06 gi|60654197|gb|AAX29791.1| cyclin-dependent kinase ( 199) 222 56.5 2.6e-06 gi|60831173|gb|AAX36960.1| cyclin-dependent kinase ( 199) 222 56.5 2.6e-06 gi|114643566|ref|XP_522347.2| PREDICTED: similar t ( 473) 226 57.7 2.7e-06 gi|148726271|emb|CAN87729.1| novel protein [Danio ( 154) 214 54.6 7.2e-06 gi|148678587|gb|EDL10534.1| cyclin-dependent kinas ( 245) 216 55.2 7.5e-06 gi|148726272|emb|CAN87730.1| novel protein [Danio ( 173) 214 54.7 7.9e-06 gi|51490709|emb|CAH18646.1| putative cyclin-depend ( 195) 214 54.7 8.6e-06 gi|109095722|ref|XP_001085433.1| PREDICTED: cyclin ( 198) 214 54.7 8.7e-06 gi|1168873|sp|P46529|CDN1B_MUSVI Cyclin-dependent ( 178) 213 54.5 9.3e-06 gi|2392395|pdb|1JSU|C Chain C, P27(Kip1)CYCLIN ACD ( 84) 209 53.3 9.9e-06 >>gi|62089348|dbj|BAD93118.1| Cyclin-dependent kinase va (191 aa) initn: 1334 init1: 1334 opt: 1334 Z-score: 1571.9 bits: 297.6 E(): 6.5e-79 Smith-Waterman score: 1334; 100.000% identity (100.000% similar) in 191 aa overlap (1-191:1-191) 10 20 30 40 50 60 ef0616 AAAEVSSLWSRSWARIRRGTEALRGGAMSEPAGDVRQNPCGSKACRRLFGPVDSDQLRRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 AAAEVSSLWSRSWARIRRGTEALRGGAMSEPAGDVRQNPCGSKACRRLFGPVDSDQLRRD 10 20 30 40 50 60 70 80 90 100 110 120 ef0616 CDALMAGCIQEARERWNFDFVTETPLEGDFAWERVRGLGLPKLYLPTGPRRGRDELGGGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 CDALMAGCIQEARERWNFDFVTETPLEGDFAWERVRGLGLPKLYLPTGPRRGRDELGGGR 70 80 90 100 110 120 130 140 150 160 170 180 ef0616 RPGTSPALLQGTAEEDHVDLSLSCTLVPRSGEQAEGSPGGPGDSQGRKRRQTSMTDFYHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 RPGTSPALLQGTAEEDHVDLSLSCTLVPRSGEQAEGSPGGPGDSQGRKRRQTSMTDFYHS 130 140 150 160 170 180 190 ef0616 KRRLIFSKRKP ::::::::::: gi|620 KRRLIFSKRKP 190 >>gi|984724|gb|AAB59559.1| cyclin-dependent kinase (181 aa) initn: 1267 init1: 1267 opt: 1267 Z-score: 1493.7 bits: 283.0 E(): 1.5e-74 Smith-Waterman score: 1267; 99.448% identity (100.000% similar) in 181 aa overlap (11-191:1-181) 10 20 30 40 50 60 ef0616 AAAEVSSLWSRSWARIRRGTEALRGGAMSEPAGDVRQNPCGSKACRRLFGPVDSDQLRRD ::::::::::::::::::::::::::::::::::::::::::::.::::: gi|984 RSWARIRRGTEALRGGAMSEPAGDVRQNPCGSKACRRLFGPVDSEQLRRD 10 20 30 40 50 70 80 90 100 110 120 ef0616 CDALMAGCIQEARERWNFDFVTETPLEGDFAWERVRGLGLPKLYLPTGPRRGRDELGGGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|984 CDALMAGCIQEARERWNFDFVTETPLEGDFAWERVRGLGLPKLYLPTGPRRGRDELGGGR 60 70 80 90 100 110 130 140 150 160 170 180 ef0616 RPGTSPALLQGTAEEDHVDLSLSCTLVPRSGEQAEGSPGGPGDSQGRKRRQTSMTDFYHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|984 RPGTSPALLQGTAEEDHVDLSLSCTLVPRSGEQAEGSPGGPGDSQGRKRRQTSMTDFYHS 120 130 140 150 160 170 190 ef0616 KRRLIFSKRKP ::::::::::: gi|984 KRRLIFSKRKP 180 >>gi|986879|gb|AAB59560.1| cyclin-dependent kinase (181 aa) initn: 1259 init1: 1259 opt: 1259 Z-score: 1484.3 bits: 281.3 E(): 4.9e-74 Smith-Waterman score: 1259; 98.895% identity (99.448% similar) in 181 aa overlap (11-191:1-181) 10 20 30 40 50 60 ef0616 AAAEVSSLWSRSWARIRRGTEALRGGAMSEPAGDVRQNPCGSKACRRLFGPVDSDQLRRD ::::::::::::::::::::::::::::::::::::::::::::.:: :: gi|986 RSWARIRRGTEALRGGAMSEPAGDVRQNPCGSKACRRLFGPVDSEQLSRD 10 20 30 40 50 70 80 90 100 110 120 ef0616 CDALMAGCIQEARERWNFDFVTETPLEGDFAWERVRGLGLPKLYLPTGPRRGRDELGGGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|986 CDALMAGCIQEARERWNFDFVTETPLEGDFAWERVRGLGLPKLYLPTGPRRGRDELGGGR 60 70 80 90 100 110 130 140 150 160 170 180 ef0616 RPGTSPALLQGTAEEDHVDLSLSCTLVPRSGEQAEGSPGGPGDSQGRKRRQTSMTDFYHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|986 RPGTSPALLQGTAEEDHVDLSLSCTLVPRSGEQAEGSPGGPGDSQGRKRRQTSMTDFYHS 120 130 140 150 160 170 190 ef0616 KRRLIFSKRKP ::::::::::: gi|986 KRRLIFSKRKP 180 >>gi|168278004|dbj|BAG10980.1| cyclin-dependent kinase i (164 aa) initn: 1158 init1: 1158 opt: 1158 Z-score: 1366.5 bits: 259.4 E(): 1.8e-67 Smith-Waterman score: 1158; 100.000% identity (100.000% similar) in 164 aa overlap (28-191:1-164) 10 20 30 40 50 60 ef0616 AAAEVSSLWSRSWARIRRGTEALRGGAMSEPAGDVRQNPCGSKACRRLFGPVDSDQLRRD ::::::::::::::::::::::::::::::::: gi|168 MSEPAGDVRQNPCGSKACRRLFGPVDSDQLRRD 10 20 30 70 80 90 100 110 120 ef0616 CDALMAGCIQEARERWNFDFVTETPLEGDFAWERVRGLGLPKLYLPTGPRRGRDELGGGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 CDALMAGCIQEARERWNFDFVTETPLEGDFAWERVRGLGLPKLYLPTGPRRGRDELGGGR 40 50 60 70 80 90 130 140 150 160 170 180 ef0616 RPGTSPALLQGTAEEDHVDLSLSCTLVPRSGEQAEGSPGGPGDSQGRKRRQTSMTDFYHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 RPGTSPALLQGTAEEDHVDLSLSCTLVPRSGEQAEGSPGGPGDSQGRKRRQTSMTDFYHS 100 110 120 130 140 150 190 ef0616 KRRLIFSKRKP ::::::::::: gi|168 KRRLIFSKRKP 160 >>gi|119624311|gb|EAX03906.1| cyclin-dependent kinase in (227 aa) initn: 1157 init1: 1157 opt: 1157 Z-score: 1363.5 bits: 259.3 E(): 2.6e-67 Smith-Waterman score: 1157; 98.795% identity (99.398% similar) in 166 aa overlap (26-191:62-227) 10 20 30 40 50 ef0616 AAAEVSSLWSRSWARIRRGTEALRGGAMSEPAGDVRQNPCGSKACRRLFGPVDSD :::::::::::::::::::::::::::::. gi|119 GVFRRQTTHSSNPPLPGQQSCCNHRDFFCSGAMSEPAGDVRQNPCGSKACRRLFGPVDSE 40 50 60 70 80 90 60 70 80 90 100 110 ef0616 QLRRDCDALMAGCIQEARERWNFDFVTETPLEGDFAWERVRGLGLPKLYLPTGPRRGRDE :: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QLSRDCDALMAGCIQEARERWNFDFVTETPLEGDFAWERVRGLGLPKLYLPTGPRRGRDE 100 110 120 130 140 150 120 130 140 150 160 170 ef0616 LGGGRRPGTSPALLQGTAEEDHVDLSLSCTLVPRSGEQAEGSPGGPGDSQGRKRRQTSMT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LGGGRRPGTSPALLQGTAEEDHVDLSLSCTLVPRSGEQAEGSPGGPGDSQGRKRRQTSMT 160 170 180 190 200 210 180 190 ef0616 DFYHSKRRLIFSKRKP :::::::::::::::: gi|119 DFYHSKRRLIFSKRKP 220 >>gi|12804965|gb|AAH01935.1| Cyclin-dependent kinase inh (164 aa) initn: 1152 init1: 1152 opt: 1152 Z-score: 1359.5 bits: 258.1 E(): 4.4e-67 Smith-Waterman score: 1152; 99.390% identity (100.000% similar) in 164 aa overlap (28-191:1-164) 10 20 30 40 50 60 ef0616 AAAEVSSLWSRSWARIRRGTEALRGGAMSEPAGDVRQNPCGSKACRRLFGPVDSDQLRRD :::::::::::::::::::::::::::.::::: gi|128 MSEPAGDVRQNPCGSKACRRLFGPVDSEQLRRD 10 20 30 70 80 90 100 110 120 ef0616 CDALMAGCIQEARERWNFDFVTETPLEGDFAWERVRGLGLPKLYLPTGPRRGRDELGGGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 CDALMAGCIQEARERWNFDFVTETPLEGDFAWERVRGLGLPKLYLPTGPRRGRDELGGGR 40 50 60 70 80 90 130 140 150 160 170 180 ef0616 RPGTSPALLQGTAEEDHVDLSLSCTLVPRSGEQAEGSPGGPGDSQGRKRRQTSMTDFYHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 RPGTSPALLQGTAEEDHVDLSLSCTLVPRSGEQAEGSPGGPGDSQGRKRRQTSMTDFYHS 100 110 120 130 140 150 190 ef0616 KRRLIFSKRKP ::::::::::: gi|128 KRRLIFSKRKP 160 >>gi|729143|sp|P38936|CDN1A_HUMAN Cyclin-dependent kinas (164 aa) initn: 1144 init1: 1144 opt: 1144 Z-score: 1350.1 bits: 256.3 E(): 1.5e-66 Smith-Waterman score: 1144; 98.780% identity (99.390% similar) in 164 aa overlap (28-191:1-164) 10 20 30 40 50 60 ef0616 AAAEVSSLWSRSWARIRRGTEALRGGAMSEPAGDVRQNPCGSKACRRLFGPVDSDQLRRD :::::::::::::::::::::::::::.:: :: gi|729 MSEPAGDVRQNPCGSKACRRLFGPVDSEQLSRD 10 20 30 70 80 90 100 110 120 ef0616 CDALMAGCIQEARERWNFDFVTETPLEGDFAWERVRGLGLPKLYLPTGPRRGRDELGGGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|729 CDALMAGCIQEARERWNFDFVTETPLEGDFAWERVRGLGLPKLYLPTGPRRGRDELGGGR 40 50 60 70 80 90 130 140 150 160 170 180 ef0616 RPGTSPALLQGTAEEDHVDLSLSCTLVPRSGEQAEGSPGGPGDSQGRKRRQTSMTDFYHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|729 RPGTSPALLQGTAEEDHVDLSLSCTLVPRSGEQAEGSPGGPGDSQGRKRRQTSMTDFYHS 100 110 120 130 140 150 190 ef0616 KRRLIFSKRKP ::::::::::: gi|729 KRRLIFSKRKP 160 >>gi|30584807|gb|AAP36656.1| Homo sapiens cyclin-depende (165 aa) initn: 1144 init1: 1144 opt: 1144 Z-score: 1350.1 bits: 256.3 E(): 1.5e-66 Smith-Waterman score: 1144; 98.780% identity (99.390% similar) in 164 aa overlap (28-191:1-164) 10 20 30 40 50 60 ef0616 AAAEVSSLWSRSWARIRRGTEALRGGAMSEPAGDVRQNPCGSKACRRLFGPVDSDQLRRD :::::::::::::::::::::::::::.:: :: gi|305 MSEPAGDVRQNPCGSKACRRLFGPVDSEQLSRD 10 20 30 70 80 90 100 110 120 ef0616 CDALMAGCIQEARERWNFDFVTETPLEGDFAWERVRGLGLPKLYLPTGPRRGRDELGGGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 CDALMAGCIQEARERWNFDFVTETPLEGDFAWERVRGLGLPKLYLPTGPRRGRDELGGGR 40 50 60 70 80 90 130 140 150 160 170 180 ef0616 RPGTSPALLQGTAEEDHVDLSLSCTLVPRSGEQAEGSPGGPGDSQGRKRRQTSMTDFYHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 RPGTSPALLQGTAEEDHVDLSLSCTLVPRSGEQAEGSPGGPGDSQGRKRRQTSMTDFYHS 100 110 120 130 140 150 190 ef0616 KRRLIFSKRKP ::::::::::: gi|305 KRRLIFSKRKPL 160 >>gi|117644615|emb|CAL37798.1| hypothetical protein [syn (164 aa) initn: 1138 init1: 1138 opt: 1138 Z-score: 1343.1 bits: 255.0 E(): 3.6e-66 Smith-Waterman score: 1138; 98.171% identity (99.390% similar) in 164 aa overlap (28-191:1-164) 10 20 30 40 50 60 ef0616 AAAEVSSLWSRSWARIRRGTEALRGGAMSEPAGDVRQNPCGSKACRRLFGPVDSDQLRRD :::::::::::::::::::::::::::.:: :: gi|117 MSEPAGDVRQNPCGSKACRRLFGPVDSEQLSRD 10 20 30 70 80 90 100 110 120 ef0616 CDALMAGCIQEARERWNFDFVTETPLEGDFAWERVRGLGLPKLYLPTGPRRGRDELGGGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 CDALMAGCIQEARERWNFDFVTETPLEGDFAWERVRGLGLPKLYLPTGPRRGRDELGGGR 40 50 60 70 80 90 130 140 150 160 170 180 ef0616 RPGTSPALLQGTAEEDHVDLSLSCTLVPRSGEQAEGSPGGPGDSQGRKRRQTSMTDFYHS ::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::: gi|117 RPGTSPALLQGTAEEDHVDLSLSCTLVPRSGEQAEGSPGGPGDSRGRKRRQTSMTDFYHS 100 110 120 130 140 150 190 ef0616 KRRLIFSKRKP ::::::::::: gi|117 KRRLIFSKRKP 160 >>gi|90078022|dbj|BAE88691.1| unnamed protein product [M (164 aa) initn: 1100 init1: 1100 opt: 1100 Z-score: 1298.5 bits: 246.8 E(): 1.1e-63 Smith-Waterman score: 1100; 95.732% identity (96.951% similar) in 164 aa overlap (28-191:1-164) 10 20 30 40 50 60 ef0616 AAAEVSSLWSRSWARIRRGTEALRGGAMSEPAGDVRQNPCGSKACRRLFGPVDSDQLRRD ::: ::.:: :::::::::::::::::.:: :: gi|900 MSEQAGSVRPNPCGSKACRRLFGPVDSEQLSRD 10 20 30 70 80 90 100 110 120 ef0616 CDALMAGCIQEARERWNFDFVTETPLEGDFAWERVRGLGLPKLYLPTGPRRGRDELGGGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|900 CDALMAGCIQEARERWNFDFVTETPLEGDFAWERVRGLGLPKLYLPTGPRRGRDELGGGR 40 50 60 70 80 90 130 140 150 160 170 180 ef0616 RPGTSPALLQGTAEEDHVDLSLSCTLVPRSGEQAEGSPGGPGDSQGRKRRQTSMTDFYHS ::::::::::::::::::::::::::::::::: : :::::::::::::::::::::::: gi|900 RPGTSPALLQGTAEEDHVDLSLSCTLVPRSGEQPEESPGGPGDSQGRKRRQTSMTDFYHS 100 110 120 130 140 150 190 ef0616 KRRLIFSKRKP ::::::::::: gi|900 KRRLIFSKRKP 160 191 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Fri Aug 8 12:03:20 2008 done: Fri Aug 8 12:06:12 2008 Total Scan time: 633.820 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]