hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-12061370/chunk_1/iprscan-20080808-12061370.nocrc
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Query sequence: ef06164
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02234.9.ls Cyclin-dependent kinase inhibitor               79.5    9.8e-21   1
PF02234.9.fs Cyclin-dependent kinase inhibitor               77.6    3.1e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02234.9.fs   1/1      46    96 ..     1    58 []    77.6  3.1e-20
PF02234.9.ls   1/1      46    96 ..     1    58 []    79.5  9.8e-21

Alignments of top-scoring domains:
PF02234.9.fs: domain 1 of 1, from 46 to 96: score 77.6, E = 3.1e-20
                   *->rnlfgPvdhElEeffaaaEkqLkeqqkkFiedsqKyNFDFvndtPLe
                      r+lfgPvd++  +++++++  ++++ ++   +++++NFDFv++tPLe
     ef06164    46    RRLFGPVDSD--QLRRDCDALMAGCIQE---ARERWNFDFVTETPLE 87   

                   GSGRYeWvkvd<-*
                   G  ++ W++v    
     ef06164    88 G--DFAWERVR    96   

PF02234.9.ls: domain 1 of 1, from 46 to 96: score 79.5, E = 9.8e-21
                   *->rnlfgPvdhElEeffaaaEkqLkeqqkkFiedsqKyNFDFvndtPLe
                      r+lfgPvd++  +++++++  ++++ ++   +++++NFDFv++tPLe
     ef06164    46    RRLFGPVDSD--QLRRDCDALMAGCIQE---ARERWNFDFVTETPLE 87   

                   GSGRYeWvkvd<-*
                   G  ++ W++v    
     ef06164    88 G--DFAWERVR    96   

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