hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-12120716/chunk_1/iprscan-20080808-12120716.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ef06171 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00069.15.ls Protein kinase domain 302.6 6.6e-88 1 PF00069.15.fs Protein kinase domain 300.7 2.4e-87 1 PF00659.9.ls POLO box duplicated region 237.5 2.7e-68 2 PF00659.9.fs POLO box duplicated region 233.6 3.8e-67 2 PF07714.7.fs Protein tyrosine kinase 99.5 8.9e-29 1 PF07714.7.ls Protein tyrosine kinase 99.7 8.3e-27 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00069.15.fs 1/1 116 368 .. 1 287 [] 300.7 2.4e-87 PF00069.15.ls 1/1 116 368 .. 1 287 [] 302.6 6.6e-88 PF07714.7.ls 1/1 116 368 .. 1 272 [] 99.7 8.3e-27 PF07714.7.fs 1/1 153 368 .. 41 272 .] 99.5 8.9e-29 PF00659.9.ls 1/2 544 607 .. 1 76 [] 112.3 1.3e-30 PF00659.9.fs 1/2 544 607 .. 1 76 [] 110.4 4.3e-31 PF00659.9.fs 2/2 640 711 .. 1 76 [] 123.2 8.8e-35 PF00659.9.ls 2/2 640 711 .. 1 76 [] 125.2 1.7e-34 Alignments of top-scoring domains: PF00069.15.fs: domain 1 of 1, from 116 to 368: score 300.7, E = 2.4e-87 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr y+++++lG+G+f+++y+ ++ ++k++A Kii+ ++ + +++++ ef06171 116 YCRGKVLGKGGFAKCYEMTDLTNNKVYAAKIIPHSRVAKPHQREKID 162 lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse Ei++++ L+H+++v+++++fedk ++y+ lEyc + ++l+ ef06171 163 K-EIELHRILHHKHVVQFYHYFEDKENIYILLEYCSRR----SMAHILK- 206 trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv ++++l +e e++ +++Qi++gl+YLH++ i+HRDLK+ N+++++ ++ ef06171 207 --ARKVL--TEPEVRYYLRQIVSGLKYLHEQEILHRDLKLGNFFINEAME 252 vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkvD + K++DFGlA+ l ++ ++ t++GTp+Y++PEvl+ +g+g ++D ef06171 253 L----KVGDFGLAARL-EpLEHrRRTICGTPNYLSPEVLN-KQGHGCESD 296 vWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspewdsi +W+lG+++y +l+G+pPF + ++ +r i+++++ +s ef06171 297 IWALGCVMYTMLLGRPPFETT-----NLKETYRCIREARYTMPSSLL--- 338 srsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* +ak+Li ++L k+P++R++ ++i H++f ef06171 339 ------------APAKHLIASMLSKNPEDRPSLDDIIRHDFF 368 PF00069.15.ls: domain 1 of 1, from 116 to 368: score 302.6, E = 6.6e-88 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr y+++++lG+G+f+++y+ ++ ++k++A Kii+ ++ + +++++ ef06171 116 YCRGKVLGKGGFAKCYEMTDLTNNKVYAAKIIPHSRVAKPHQREKID 162 lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse Ei++++ L+H+++v+++++fedk ++y+ lEyc + ++l+ ef06171 163 K-EIELHRILHHKHVVQFYHYFEDKENIYILLEYCSRR----SMAHILK- 206 trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv ++++l +e e++ +++Qi++gl+YLH++ i+HRDLK+ N+++++ ++ ef06171 207 --ARKVL--TEPEVRYYLRQIVSGLKYLHEQEILHRDLKLGNFFINEAME 252 vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkvD + K++DFGlA+ l ++ ++ t++GTp+Y++PEvl+ +g+g ++D ef06171 253 L----KVGDFGLAARL-EpLEHrRRTICGTPNYLSPEVLN-KQGHGCESD 296 vWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspewdsi +W+lG+++y +l+G+pPF + ++ +r i+++++ +s ef06171 297 IWALGCVMYTMLLGRPPFETT-----NLKETYRCIREARYTMPSSLL--- 338 srsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* +ak+Li ++L k+P++R++ ++i H++f ef06171 339 ------------APAKHLIASMLSKNPEDRPSLDDIIRHDFF 368 PF07714.7.ls: domain 1 of 1, from 116 to 368: score 99.7, E = 8.3e-27 *->lklgkkLGeGaFGeVykGtlkgsgdgteikV.AVKtLke.igaseee gk+LG+G F + y+ t t+ kV A K+++++ a +++ ef06171 116 YCRGKVLGKGGFAKCYEMTDL-----TNNKVyAAKIIPHsRVAKPHQ 157 ieredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegG re+ +E+++ + l +H+++V+++ + +e +yi +Ey+ ef06171 158 --REKIDKEIELHRIL-HHKHVVQFYHYFED-KEN----IYILLEYCSRR 199 dLldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcL ++ + L++ ++ Lt ++ + +Qi +G+ YL+++ + HRDL N ef06171 200 SMAHILKA---RKVLTEPEVRYYLRQIVSGLKYLHEQEILHRDLKLGNFF 246 VsenlvVKIsDFGLaRdiynddyYvrkkgggklPv....kWmAPEslkyg ++e + K++DFGLa + ++++ + +++ ++PE+l+ ef06171 247 INEAMELKVGDFGLAARL-------EPLEHRRRTIcgtpNYLSPEVLNKQ 289 kFtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPe +SD+W+ G++++ ++ G++P ++ e++ + e++y +p ef06171 290 GHGCESDIWALGCVMYTMLL-GRPP-FETTNLKETYRCIREARYTMPSSL 337 nCPdelYdlMlqCWaedPedRPtFsel..veeL<-* + +l+ + ++PedRP+ ++ ++ ++ ef06171 338 --LAPAKHLIASMLSKNPEDRPSLDDIirHDFF 368 PF07714.7.fs: domain 1 of 1, from 153 to 368: score 99.5, E = 8.9e-29 *->aseeeieredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyi a +++ re+ +E+++ + l +H+++V+++ + +e +yi ef06171 153 AKPHQ--REKIDKEIELHRIL-HHKHVVQFYHYFED-KEN----IYI 191 VtEymegGdLldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHR +Ey+ ++ + L++ ++ Lt ++ + +Qi +G+ YL+++ + HR ef06171 192 LLEYCSRRSMAHILKA---RKVLTEPEVRYYLRQIVSGLKYLHEQEILHR 238 DLAARNcLVsenlvVKIsDFGLaRdiynddyYvrkkgggklPv....kWm DL N ++e + K++DFGLa + ++++ + +++ + ef06171 239 DLKLGNFFINEAMELKVGDFGLAARL-------EPLEHRRRTIcgtpNYL 281 APEslkygkFtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyed +PE+l+ +SD+W+ G++++ ++ G++P ++ e++ + e+ ef06171 282 SPEVLNKQGHGCESDIWALGCVMYTMLL-GRPP-FETTNLKETYRCIREA 329 GyRLprPenCPdelYdlMlqCWaedPedRPtFsel..veeL<-* +y +p + +l+ + ++PedRP+ ++ ++ ++ ef06171 330 RYTMPSSL--LAPAKHLIASMLSKNPEDRPSLDDIirHDFF 368 PF00659.9.ls: domain 1 of 2, from 544 to 607: score 112.3, E = 1.3e-30 *->ysnKyglgyqLSDgsvgVnFFnDhtklillpdgeeYLvtYidedrdr ysnKyg+gyqLSD++vgV+ Fn++++++llpd+++ v+Y++e ++ ef06171 544 YSNKYGFGYQLSDHTVGVL-FNNGAHMSLLPDKKT--VHYYAEL-GQ 586 etyplstlLKYGemsgvpesLrskltllk<-* ++++++t+ +pe+++s++t+lk ef06171 587 CSVFPATD--------APEQFISQVTVLK 607 PF00659.9.fs: domain 1 of 2, from 544 to 607: score 110.4, E = 4.3e-31 *->ysnKyglgyqLSDgsvgVnFFnDhtklillpdgeeYLvtYidedrdr ysnKyg+gyqLSD++vgV+ Fn++++++llpd+++ v+Y++e ++ ef06171 544 YSNKYGFGYQLSDHTVGVL-FNNGAHMSLLPDKKT--VHYYAEL-GQ 586 etyplstlLKYGemsgvpesLrskltllk<-* ++++++t+ +pe+++s++t+lk ef06171 587 CSVFPATD--------APEQFISQVTVLK 607 PF00659.9.fs: domain 2 of 2, from 640 to 711: score 123.2, E = 8.8e-35 *->ysnKyglgyqLSDgsvgVnFFnDhtklillpdgeeYLvtYidedrdr ++++++l++ ++Dg+++VnF++Dhtk+i++++ eeYL+tYi+edr++ ef06171 640 LKSDKALMMLFNDGTFQVNFYHDHTKIIICSQNEEYLLTYINEDRIS 686 etyplstlLKYGemsgvpesLrskltllk<-* +t++l+tl +msg++ +L+++++++ ef06171 687 TTFRLTTL----LMSGCSSELKNRMEYAL 711 PF00659.9.ls: domain 2 of 2, from 640 to 711: score 125.2, E = 1.7e-34 *->ysnKyglgyqLSDgsvgVnFFnDhtklillpdgeeYLvtYidedrdr ++++++l++ ++Dg+++VnF++Dhtk+i++++ eeYL+tYi+edr++ ef06171 640 LKSDKALMMLFNDGTFQVNFYHDHTKIIICSQNEEYLLTYINEDRIS 686 etyplstlLKYGemsgvpesLrskltllk<-* +t++l+tl +msg++ +L+++++++ ef06171 687 TTFRLTTL----LMSGCSSELKNRMEYAL 711 //