hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-12252746/chunk_1/iprscan-20080808-12252746.nocrc
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Query sequence: ef06286
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00242                                                1336.1          0   1
SM00015                                                  27.4     0.0019   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00242    1/1      77   779 ..     1   771 []  1336.1        0
SM00015    1/1     780   802 ..     1    23 []    27.4   0.0019

Alignments of top-scoring domains:
SM00242: domain 1 of 1, from 77 to 779: score 1336.1, E = 0
                   *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav
                      +nppkf +VeDm++Lt+LnE++vlhNLk RY+++lIYTY+Gl++v++
     ef06286    77    MNPPKFSKVEDMAELTCLNEASVLHNLKERYYSGLIYTYSGLFCVVI 123  

                   NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre
                   NPYk+l piY++e++++Y+      Gk+r+E+pPH++Ai D AYr+M+++
     ef06286   124 NPYKNL-PIYSEEIVEMYK------GKKRHEMPPHIYAITDTAYRSMMQD 166  

                   keNQsIiISGESGAGKTEatKkimqYLAavsg......svesvedqiLes
                   +e+QsI+++GESGAGKTE+tKk++qYLA+v+++++++++ + +e q+L++
     ef06286   167 REDQSILCTGESGAGKTENTKKVIQYLAYVASshkskkDQGELERQLLQA 216  

                   NPiLEAFGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEKSRV
                   NPiLEAFGNAKTv+N+NSSRFGKfi+I+Fd +G ivGA+Ie+YLLEKSR 
     ef06286   217 NPILEAFGNAKTVKNDNSSRFGKFIRINFDVNGYIVGANIETYLLEKSRA 266  

                   VsQakgERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqggtpf
                   ++Qak ER +HIFY+LL+Ga e lk  l+L++      +Y++L++g    
     ef06286   267 IRQAKEERTFHIFYYLLSGAGEHLKTDLLLEP----YNKYRFLSNG---- 308  

                   ankryssgcltvdgiDDaeeFkeTdEvtlkAmrvlGfseeEqesIFrilA
                            +t++g  D++ F+eT+E    Amr++G++eeEq+  +r+++
     ef06286   309 --------HVTIPGQQDKDMFQETME----AMRIMGIPEEEQMGLLRVIS 346  

                   AILHLGNieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpeeLeka
                   ++L LGNi F+++rn   ++a+     +d +++qk+++LLg++++++ + 
     ef06286   347 GVLQLGNIVFKKERN--TDQAS----MPDNTAAQKVSHLLGINVTDFTRG 390  

                   LtkRkiktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWLVkrINk
                   +++++ik+g++   ++ k++++eqA +a  ALAKa Y+R+F WLV rINk
     ef06286   391 ILTPRIKVGRD---YVQKAQTKEQADFAIEALAKATYERMFRWLVLRINK 437  

                   sl......sayfIGVLDIyGFEiFekNSFEQfCINyaNEKLQQfFnqhvF
                   +l++++++ a+fIG+LDI+GFEiF+ NSFEQ+CINy+NEKLQQ+Fn+ +F
     ef06286   438 ALdktkrqGASFIGILDIAGFEIFDLNSFEQLCINYTNEKLQQLFNHTMF 487  

                   KlEQEEYerEGIeWtfIdFfliDNQpciDLIEkKgkrPlGIlslLDEeCl
                    lEQEEY+rEGIeW fIdF+l D+QpciDLIEk++  P+GIl+lLDEeC+
     ef06286   488 ILEQEEYQREGIEWNFIDFGL-DLQPCIDLIEKPA-GPPGILALLDEECW 535  

                   fHAqPkgTDqtFleKLnkalyhqhhkkhphfskprkSlkkgkpkkrfgrt
                   f   Pk+TD++F+eK       q  ++hp+f+kp         k  ++++
     ef06286   536 F---PKATDKSFVEKV-----MQEQGTHPKFQKP---------KQLKDKA 568  

                   aFiikHYAGdVtYnveGFLeKNkDtLfedlieLlqsSknpliasLFpeea
                   +F i HYAG+V+Y ++ +L KN+D+L++++  Ll++S+++++ +L++++ 
     ef06286   569 DFCIIHYAGKVDYKADEWLMKNMDPLNDNIATLLHQSSDKFVSELWKDVD 618  

                   dqsssaakekss.ggagksrkagr.r.epskgtisskkrppTvGsqFk.s
                             + ++ ag s++a ++  + +      k++++TvG+++k++
     ef06286   619 RII-------GLdQVAGMSETALPgAfKTR------KGMFRTVGQLYKeQ 655  

                   LneLmetLnstnPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvLEniRI
                   L++Lm+tL++tnP+F+RCI+PN+eKk+g+ d++lVl+QLr++GvLE+iRI
     ef06286   656 LAKLMATLRNTNPNFVRCIIPNHEKKAGKLDPHLVLDQLRCNGVLEGIRI 705  

                   RraGFPyRlpfdeFlqRYkvLlpktwppwggewknrlfgdakkacealLq
                   +r GFP+R  f+eF+qRY+ +l ++  p+g       f+d k+ac+++++
     ef06286   706 CRQGFPNRVVFQEFRQRYE-ILTPNSIPKG-------FMDGKQACVLMIK 747  

                   slglgiegdnldeeeyqiGkTKvFlRnpgqlaeLEelRee<-*
                   +l+       ld++ y+iG +KvF+R +g+la+LEe+R+    
     ef06286   748 ALE-------LDSNLYRIGQSKVFFR-AGVLAHLEEERDL    779  

SM00015: domain 1 of 1, from 780 to 802: score 27.4, E = 0.0019
                   *->rleraAiiIQaawRGylaRkryk<-*
                      +++  +i +Qa++RGylaRk +    
     ef06286   780    KITDVIIGFQACCRGYLARKAFA    802  

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