hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-12312101/chunk_1/iprscan-20080808-12312101.nocrc
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Query sequence: ef06292
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00563                                                  99.4    4.1e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00563    1/1     169   298 ..     1   135 []    99.4  4.1e-25

Alignments of top-scoring domains:
SM00563: domain 1 of 1, from 169 to 298: score 99.4, E = 4.1e-25
                   *->alvvaNHqSylDplvlsallprk.rrvrfvakkelfkiP.llGwllr
                      +++++ H+Sy+D+l+ls+ll++++ +v+++a+ + f   +++G llr
     ef06292   169    VVLLPSHRSYIDFLMLSFLLYNYdLPVPVIAAGMDFLGMkMVGELLR 215  

                   lagaifidRsng.drkaraalreavrryFEnhellkegew.lviFPEGTr
                   + ga+f++R +g++++++a + e+v+       +l++g+ ++ +F EGTr
     ef06292   216 MSGAFFMRRTFGgNKLYWAVFSEYVK------TMLRNGYApVEFFLEGTR 259  

                   srdgkldgeeerlkllpfKkGafrlAlkag......dvpivPvaisgt<-
                   sr           k+l++K G   ++++   +++  d  +vP++is++  
     ef06292   260 SRSA---------KTLTPKFGLLNIVMEPFfkrevfDTYLVPISISYD   298  

                   *
                    
     ef06292     -   -    

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