hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-12443997/chunk_1/iprscan-20080808-12443997.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ef06338 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00280 587.1 6.7e-172 9 SM00282 449.4 1.9e-130 3 SM00274 168.4 7.2e-46 5 SM00181 131.6 8.3e-35 7 SM00200 128.8 5.8e-34 1 SM00180 107.3 1.7e-27 2 SM00057 49.6 4.2e-10 4 SM00179 42.8 4.5e-08 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00274 1/5 185 210 .. 1 25 [] 33.8 2.4e-05 SM00057 1/4 185 258 .. 1 78 [] 0.4 1 SM00280 1/9 210 256 .. 1 58 [] 73.5 2.7e-17 SM00181 1/7 261 300 .. 1 32 [] 3.1 1.4e+02 SM00274 2/5 261 285 .. 1 25 [] 34.2 1.7e-05 SM00280 2/9 285 331 .. 1 58 [] 47.6 1.6e-09 SM00280 3/9 360 403 .. 1 58 [] 43.1 3.7e-08 SM00280 4/9 429 475 .. 1 58 [] 52.6 5.2e-11 SM00274 3/5 481 503 .. 1 25 [] 38.0 1.3e-06 SM00280 5/9 503 548 .. 1 58 [] 82.3 5.8e-20 SM00057 2/4 550 615 .. 1 78 [] 20.0 0.011 SM00280 6/9 568 613 .. 1 58 [] 75.3 7.3e-18 SM00274 4/5 615 638 .. 1 25 [] 27.5 0.0018 SM00057 3/4 616 680 .. 1 78 [] 2.7 0.62 SM00280 7/9 626 678 .. 1 58 [] 70.1 2.7e-16 SM00280 8/9 718 764 .. 1 58 [] 74.0 1.8e-17 SM00180 1/2 807 858 .. 1 42 [] 66.6 3.1e-15 SM00180 2/2 861 905 .. 1 42 [] 40.7 1.9e-07 SM00181 2/7 872 906 .. 1 32 [] 8.6 44 SM00181 3/7 914 952 .. 1 32 [] 6.1 73 SM00274 5/5 914 936 .. 1 25 [] 34.8 1.1e-05 SM00057 4/4 914 985 .. 1 78 [] 26.4 0.0024 SM00280 9/9 936 983 .. 1 58 [] 68.5 8.5e-16 SM00200 1/1 1144 1266 .. 1 130 [] 128.8 5.8e-34 SM00181 4/7 1346 1381 .. 1 32 [] 32.9 4.3e-05 SM00179 1/3 1347 1381 .. 1 34 [] 11.5 0.063 SM00282 1/3 1406 1542 .. 1 137 [] 167.5 1.3e-45 SM00179 2/3 1561 1600 .. 1 34 [] 9.6 0.11 SM00181 5/7 1566 1600 .. 1 32 [] 27.2 0.0022 SM00181 6/7 1605 1639 .. 1 32 [] 20.4 0.25 SM00282 2/3 1674 1810 .. 1 137 [] 135.6 5.1e-36 SM00181 7/7 1831 1867 .. 1 32 [] 33.3 3.3e-05 SM00179 3/3 1832 1867 .. 1 34 [] 21.7 0.0034 SM00282 3/3 1903 2039 .. 1 137 [] 146.2 3.4e-39 Alignments of top-scoring domains: SM00274: domain 1 of 5, from 185 to 210: score 33.8, E = 2.4e-05 *->tCenvqCpfGkvCvvd.akngearCv<-* C+++ C+fG+vC+ + + g+a+Cv ef06338 185 ACRGMLCGFGAVCEPNaEGPGRASCV 210 SM00057: domain 1 of 4, from 185 to 258: score 0.4, E = 1 *->scgkvfCqlWqKcs.....astSKCvCklPyeDCpkhagtdvCvedg +c C + c ++ ++ ++ CvCk + Cp +vC d ef06338 185 ACRGMLCGFGAVCEpnaegPGRASCVCKKSP--CPS-VVAPVCGSDA 228 rSkkektltyCkvkalrClnrknskikflhigsCta<-* + ++++C++ C+ + +i++l++g+C ef06338 229 S----TYSNECELQRAQCSQQR--RIRLLSRGPCGS 258 SM00280: domain 1 of 9, from 210 to 256: score 73.5, E = 2.7e-17 *->dCseyrsptsggllaCpreydPVCGsDGvTYsNeCeLcaaaCeaeqg +C++ Cp+ +PVCGsD +TYsNeCeL+ a C q+ ef06338 210 VCKKS---------PCPSVVAPVCGSDASTYSNECELQRAQCS--QQ 245 ksievkhdGpC<-* + i+++ +GpC ef06338 246 RRIRLLSRGPC 256 SM00181: domain 1 of 7, from 261 to 300: score 3.1, E = 1.4e+02 *->eCa..pCsnGgtEqnGtCi......sytC.CpgpGytg.....rCe< +C++ Cs G tC ++ ++ + +C Cp + +g ++++ C ef06338 261 PCSnvTCSFGS-----TCArsadglTASClCP-ATCRGapegtVCG 300 -* ef06338 - - SM00274: domain 2 of 5, from 261 to 285: score 34.2, E = 1.7e-05 *->tCenvqCpfGkvCvvdakngearCv<-* +C+nv C fG++C+ +a++ +a+C+ ef06338 261 PCSNVTCSFGSTCARSADGLTASCL 285 SM00280: domain 2 of 9, from 285 to 331: score 47.6, E = 1.6e-09 *->dCseyrsptsggllaCpre.ydPVCGsDGvTYsNeCeLcaaaCeaeq C+ C + VCGsDG Y+ eC+L aC + ef06338 285 LCPA----------TCRGApEGTVCGSDGADYPGECQLLRRACA--R 319 gksievkhdGpC<-* ++++++k+dGpC ef06338 320 QENVFKKFDGPC 331 SM00280: domain 3 of 9, from 360 to 403: score 43.1, E = 3.7e-08 *->dCseyrsptsggllaCpreydPVCGsDGvTYsNeCeLcaaaCeaeqg + +Cp +PVCG DGvTY N C + +g ef06338 360 PE------------SCPARQAPVCGDDGVTYENDCVMGRSGAA--RG 392 ksievkhdGpC<-* +++++ G+C ef06338 393 LLLQKVRSGQC 403 SM00280: domain 4 of 9, from 429 to 475: score 52.6, E = 5.2e-11 *->dCseyrsptsggllaCpreydPVCGsDGvTYsNeCeLcaaaCeaeqg C++ + C+ y+PVC+ DG+TY++ C ++a C+ q+ ef06338 429 SCDR---------VTCDGAYRPVCAQDGRTYDSDCWRQQAECR--QQ 464 ksievkhdGpC<-* + i kh+GpC ef06338 465 RAIPSKHQGPC 475 SM00274: domain 3 of 5, from 481 to 503: score 38.0, E = 1.3e-06 *->tCenvqCpfGkvCvvdakngearCv<-* +C +vqC+fG++C+v kng+a C+ ef06338 481 PCLGVQCAFGATCAV--KNGQAACE 503 SM00280: domain 5 of 9, from 503 to 548: score 82.3, E = 5.8e-20 *->dCseyrsptsggllaCpreydPVCGsDGvTYsNeCeLcaaaCeaeqg +C + aC++ ydPVCGsDGvTY++ CeL+a+aC+ g ef06338 503 ECLQ----------ACSSLYDPVCGSDGVTYGSACELEATACT--LG 537 ksievkhdGpC<-* ++i+v+++GpC ef06338 538 REIQVARKGPC 548 SM00057: domain 2 of 4, from 550 to 615: score 20.0, E = 0.011 *->scgkvfCqlWqKcsastSKCvCklPyeDCpkhagtdvCvedgrSkke cg C + c a+t +CvC P+e C ++vC dg ef06338 550 RCG--QCRFGALCEAETGRCVC--PSE-CVA-LAQPVCGSDGH---- 586 ktltyCkvkalrClnrknskikflhigsCta<-* ++++C +++ C ++ +++ + g+C ef06338 587 TYPSECMLHVHACTHQI--SLHVASAGPCET 615 SM00280: domain 6 of 9, from 568 to 613: score 75.3, E = 7.3e-18 *->dCseyrsptsggllaCpreydPVCGsDGvTYsNeCeLcaaaCeaeqg +C++ +C +PVCGsDG+TY++eC+L+++aC+ ++ ef06338 568 VCPS----------ECVALAQPVCGSDGHTYPSECMLHVHACT--HQ 602 ksievkhdGpC<-* s++v+ GpC ef06338 603 ISLHVASAGPC 613 SM00274: domain 4 of 5, from 615 to 638: score 27.5, E = 0.0018 *->tCenvqCpfGkvCvvdakngearCv<-* tC + +C+fG+vC ++ +++++rC+ ef06338 615 TCGDAVCAFGAVCSAG-QCVCPRCE 638 SM00057: domain 3 of 4, from 616 to 680: score 2.7, E = 0.62 *->scgkvfCqlWqKcsastSKCvCklPyeDCpkhagtdvCvedgrSkke cg C+ + csa+ CvC + p+ g +vC dg ef06338 616 -CGDAVCAFGAVCSAGQ--CVCPRCEH-PPP--G-PVCGSDGV---- 651 ktltyCkvkalrClnrknskikflhigsCta<-* + ++C++ Cl + +i+ g+C ef06338 652 TYGSACELREAACLQQT--QIEEARAGPCEQ 680 SM00280: domain 7 of 9, from 626 to 678: score 70.1, E = 2.7e-16 *->dCseyrsptsggllaCpre....ydPVCGsDGvTYsNeCeLcaaaCe +Cs g+++Cpr+++++ PVCGsDGvTY++ CeL+ aaC ef06338 626 VCSA-------GQCVCPRCehppPGPVCGSDGVTYGSACELREAACL 665 aeqgksievkhdGpC<-* q+++ie ++ GpC ef06338 666 --QQTQIEEARAGPC 678 SM00280: domain 8 of 9, from 718 to 764: score 74.0, E = 1.8e-17 *->dCseyrsptsggllaCpre.ydPVCGsDGvTYsNeCeLcaaaCeaeq +C+ +C + + +PVCGsDGvTYs eCeL++a+Ce + ef06338 718 VCDF----------SCQSVpGSPVCGSDGVTYSTECELKKARCE--S 752 gksievkhdGpC<-* ++++ v+ +G+C ef06338 753 QRGLYVAAQGAC 764 SM00180: domain 1 of 2, from 807 to 858: score 66.6, E = 3.1e-15 *->CdCnlpppvG.....Cdp.tGqClnCkpnttGGrrCdderCapGyy. C+Cn p+G+ +++Cdp tGqC C+p++ G rCd rC+pG+++ ef06338 807 CQCN---PHGsyggtCDPaTGQCS-CRPGVGG-LRCD--RCEPGFWn 846 ..........gC<-* ++ +++++gC ef06338 847 frgivtdgrsGC 858 SM00180: domain 2 of 2, from 861 to 905: score 40.7, E = 1.9e-07 *->CdCnlpppvG.....Cdp.tGqClnCkpnttGGrrCdderCapGyy. C C+ p+G +++C++ tG C Ckp+++G ++C +C +G ef06338 861 CSCD---PQGavrddCEQmTGLCS-CKPGVAG-PKCG--QCPDGRAl 900 ...gC<-* ++ gC ef06338 901 gpaGC 905 SM00181: domain 2 of 7, from 872 to 906: score 8.6, E = 44 *->eCa....pCsnGgtEqnGtCi....sytC..CpgpGytg...rCe<- +C++ ++ Cs C ++ +++C++Cp +G +++ Ce ef06338 872 DCEqmtgLCS---------CKpgvaGPKCgqCP-DGRALgpaGCE 906 * ef06338 - - SM00181: domain 3 of 7, from 914 to 952: score 6.1, E = 73 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg......rCe<- Ca+ C+ G ++C+++++s +C Cp + + ++ C ef06338 914 TCAemRCEFG-----ARCVeesgSAHCvCP-MLTCPeanatkVCG 952 * ef06338 - - SM00274: domain 5 of 5, from 914 to 936: score 34.8, E = 1.1e-05 *->tCenvqCpfGkvCvvdakngearCv<-* tC++++C+fG++Cv + g+a+Cv ef06338 914 TCAEMRCEFGARCVE--ESGSAHCV 936 SM00057: domain 4 of 4, from 914 to 985: score 26.4, E = 0.0024 *->scgkvfCqlWqKcsast..SKCvCklPyeDCpkhagtdvCvedgrSk +c+ C + +c++++++ CvC + Cp+ + t vC dg ef06338 914 TCAEMRCEFGARCVEESgsAHCVCPM-LT-CPEANATKVCGSDGV-- 956 kektltyCkvkalrClnrknskikflhigsCta<-* + ++C++k++ C+ +i++ + g+C++ ef06338 957 --TYGNECQLKTIACRQGL--QISIQSLGPCQE 985 SM00280: domain 9 of 9, from 936 to 983: score 68.5, E = 8.5e-16 *->dCseyrsptsggllaCpre.ydPVCGsDGvTYsNeCeLcaaaCeaeq +C++ l Cp + VCGsDGvTY+NeC+L+ aC+ q ef06338 936 VCPM---------LTCPEAnATKVCGSDGVTYGNECQLKTIACR--Q 971 gksievkhdGpC<-* g +i+++ GpC ef06338 972 GLQISIQSLGPC 983 SM00200: domain 1 of 1, from 1144 to 1266: score 128.8, E = 5.8e-34 *->atqsfgvslsvlsdggenlqYspsLeDpkSeeykelardveklleqi at+ f+++l +++++g++l+Y+p+++DpkSe+++e+ar++e++l+++ ef06338 1144 ATKVFQGVLELEGVEGQELFYTPEMADPKSELFGETARSIESTLDDL 1190 fgktdlkpdflgveviefrngseknsvvdlgllfnetvtnv.aqsVeedl f+++d+k+df +v+ +++++g+ sv++++ ++++++t+++a++V +l ef06338 1191 FRNSDVKKDFRSVRLRDLGPGK---SVRAIVDVHFDPTTAFrAPDVARAL 1237 lqvikqaksynlkisniktevevvdvkdkisads<-* l++i+ +++ +l +++ + +e+v+++d +d+ ef06338 1238 LRQIQVSRRRSLGVRR--PLQEHVRFMD---FDW 1266 SM00181: domain 4 of 7, from 1346 to 1381: score 32.9, E = 4.3e-05 *->eCa..pCsnGgtEqnGtCi......sytC.CpgpGytg.rCe<-* +C+++pC +G GtC++ ++++tC+Cp +G g Ce ef06338 1346 PCDsqPCFHG-----GTCQdwalggGFTCsCP-AGRGGaVCE 1381 SM00179: domain 1 of 3, from 1347 to 1381: score 11.5, E = 0.063 *->DiDEC...pCqnGGptgtCiN...vGSYrC.CppGyt.rnCe<-* C+++pC +GG tC++ G+++C+Cp+G + Ce ef06338 1347 ----CdsqPCFHGG---TCQDwalGGGFTCsCPAGRGgAVCE 1381 SM00282: domain 1 of 3, from 1406 to 1542: score 167.5, E = 1.3e-45 *->t.lsisfsFrTtspnGlLlyag...ggdflaleLvlEDsdgdGrlvl ++l++ ++Fr +p+GlLly+g+ +g+dflal+L dGr++l ef06338 1406 HtLRLALEFRALEPQGLLLYNGnarGKDFLALALL------DGRVQL 1446 rydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggn r+d+Gs gpa+lts +p+ GqWHr++++r r++tLsVDg+ ef06338 1447 RFDTGS----GPAVLTSA----VPVEPGQWHRLELSRHWRRGTLSVDGET 1488 pvsges....t.LdldkeesgplylGGlPe.........lpvspgFrGCi pv+ges++++++L+ld ++l++GG+Pe++ +++ v +g+rGCi ef06338 1489 PVLGESpsgtDgLNLD----TDLFVGGVPEdqaavalerTFVGAGLRGCI 1534 rnlrvngk<-* r l vn++ ef06338 1535 RLLDVNNQ 1542 SM00179: domain 2 of 3, from 1561 to 1600: score 9.6, E = 0.11 *->DiDEC........pCqnGGptgtCiN..vGSYrC.CppGyt.rnCe< EC++++ ++pC+ G+ C+N + G ++C+CppG +++C ef06338 1561 ---ECgdhpclpnPCHGGA---PCQNleAGRFHCqCPPGRVgPTCA 1600 -* ef06338 - - SM00181: domain 5 of 7, from 1566 to 1600: score 27.2, E = 0.0022 *->eCa..pCsnGgtEqnGtCi.....sytC.CpgpGytg.rCe<-* +C+++pC+ G + C++ + + ++C+Cp pG g++C ef06338 1566 PCLpnPCHGG-----APCQnleagRFHCqCP-PGRVGpTCA 1600 SM00181: domain 6 of 7, from 1605 to 1639: score 20.4, E = 0.25 *->eCa..pCsnGgtEqnGtCi.....sytC.CpgpGytg.rCe<-* +C+++pC+ + C+ ++++ +C+Cp G +g+ C+ ef06338 1605 PCQpnPCHGA-----APCRvlpegGAQCeCP-LGREGtFCQ 1639 SM00282: domain 2 of 3, from 1674 to 1810: score 135.6, E = 5.1e-36 *->t.lsisfsFrTtspnGlLlyag.....ggdflaleLvlEDsdgdGrl ++ +++ F + p+GlLly+g++++++gdf++l+L+ d rl ef06338 1674 EkMALEVVFLARGPSGLLLYNGqktdgKGDFVSLALR------DRRL 1714 vlrydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDg ++rydlG g+a+++s +p+ G W rVs+erngr++ L V + ef06338 1715 EFRYDLGK----GAAVIRSR----EPVTLGAWTRVSLERNGRKGALRVGD 1756 gnpvsges....t.LdldkeesgplylGGlPe.......lpvspgFrGCi g +v+ges+ ++t L+l+ +ply+GG+P+ ++ + +vs+gF+G i ef06338 1757 GPRVLGESpvphTvLNLK----EPLYVGGAPDfsklaraAAVSSGFDGAI 1802 rnlrvngk<-* + +++ g+ ef06338 1803 QLVSLGGR 1810 SM00181: domain 7 of 7, from 1831 to 1867: score 33.3, E = 3.3e-05 *->eCa.....pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* +C + +++pC nG + C++++ y C Cp G++g++Ce ef06338 1831 PCTrasghPCLNG-----ASCVpreaAYVClCP-GGFSGpHCE 1867 SM00179: domain 3 of 3, from 1832 to 1867: score 21.7, E = 0.0034 *->DiDEC......pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-* C++ +++pC nG+ C+ ++ Y C Cp G+++++Ce ef06338 1832 ----CtrasghPCLNGA---SCVPrEAAYVClCPGGFSgPHCE 1867 SM00282: domain 3 of 3, from 1903 to 2039: score 146.2, E = 3.4e-39 *->t.lsisfsFrTtspnGlLlyag....ggdflaleLvlEDsdgdGrlv +++++++s+rT++++Gl l++g+ +++ d++al++v dG+l+ ef06338 1903 QsNHFELSLRTEATQGLVLWSGkateRADYVALAIV------DGHLQ 1943 lrydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDgg l+y+lGs p++l+s+ +p+n ++W rV++ r++r+++L+V ++ ef06338 1944 LSYNLGS----QPVVLRST----VPVNTNRWLRVVAHREQREGSLQVGNE 1985 npvsges....t.LdldkeesgplylGGlPe........lpvspgFrGCi +pv+g+s+ + t+Ld+d g l+lGGlPe + ++ ++++ +gF+GC+ ef06338 1986 APVTGSSplgaTqLDTD----GALWLGGLPElpvgpalpKAYGTGFVGCL 2031 rnlrvngk<-* r+++v + ef06338 2032 RDVVVGRH 2039 //