hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-12505549/chunk_1/iprscan-20080808-12505549.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ef06339 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02008.10.fs CXXC zinc finger 75.0 6.8e-30 1 PF02008.10.ls CXXC zinc finger 77.0 5.5e-20 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02008.10.fs 1/1 28 75 .. 1 49 [] 75.0 6.8e-30 PF02008.10.ls 1/1 28 75 .. 1 49 [] 77.0 5.5e-20 Alignments of top-scoring domains: PF02008.10.fs: domain 1 of 1, from 28 to 75: score 75.0, E = 6.8e-30 *->qnsrkrrrCGvCegCqrpeDCGqCtaCldkpkFGGpgrkkQWkCiqR q +r +r CG+Ce+C+r+eDCG+C++C+d++kFGGp++ +Q kC+ R ef06339 28 QIKRSARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQ-KCRLR 73 RC<-* +C ef06339 74 QC 75 PF02008.10.ls: domain 1 of 1, from 28 to 75: score 77.0, E = 5.5e-20 *->qnsrkrrrCGvCegCqrpeDCGqCtaCldkpkFGGpgrkkQWkCiqR q +r +r CG+Ce+C+r+eDCG+C++C+d++kFGGp++ +Q kC+ R ef06339 28 QIKRSARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQ-KCRLR 73 RC<-* +C ef06339 74 QC 75 //