hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-05022903/chunk_1/iprscan-20090618-05022903.nocrc
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Query sequence: ef06345
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08612.1.ls TATA-binding related factor (TRF)              402.2   7.1e-118   1
PF08612.1.fs TATA-binding related factor (TRF)              400.5   2.3e-117   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08612.1.fs   1/1      28   226 ..     1   268 []   400.5 2.3e-117
PF08612.1.ls   1/1      28   226 ..     1   268 []   402.2 7.1e-118

Alignments of top-scoring domains:
PF08612.1.fs: domain 1 of 1, from 28 to 226: score 400.5, E = 2.3e-117
                   *->MGvtcvlsvpvaeGKSvaqTideltrrLealGAvkqGtfsvdcetYk
                      MGvtcv+++pvaeGKSv+qT++ ltr+Le+lGA+kqGtf+vdcetY+
     ef06345    28    MGVTCVSQMPVAEGKSVQQTVELLTRKLEMLGAEKQGTFCVDCETYH 74   

                   pnpqsiGRsEHHnGniPqGaqElAeadnqgqpskllyvlhnseqPgscfs
                   +++++                     ++qgq++kl+yv+hnse+P+scf+
     ef06345    75 TAASTL--------------------GSQGQTGKLMYVMHNSEYPLSCFA 104  

                   iipksaieggpAEiLnGsEFsiPDsHLHqkqivlvaDsffdllmeKlkSy
                   +     +e+gp                     +l+aD++fd+lm+Klk++
     ef06345   105 L-----FENGP---------------------CLIADTNFDVLMVKLKGF 128  

                   ftskkalkiEsrGarYeLmGDeyGDFliRvGtVtmgtaEtfRGilvEVEY
                   f+s+ka kiE+rG+rY     +y+DFl++vGtVtmg   ++RGi+vEVEY
     ef06345   129 FQSAKASKIETRGTRY-----QYCDFLVKVGTVTMGP--SARGISVEVEY 171  

                   taCePcvspgdCwkLmeEFlqsflgsnvprslPsvFvnaelnfenssklp
                       Pcv+  dCw+L+ EFlqsflgs++p + P+vF          ++++
     ef06345   172 ---GPCVVASDCWSLLLEFLQSFLGSHTP-GAPAVF---------GNRHD 208  

                   diYtpldlvDTmvQYlelfak<-*
                     Y+p+   DTmvQY+elf+k   
     ef06345   209 AVYGPA---DTMVQYMELFNK    226  

PF08612.1.ls: domain 1 of 1, from 28 to 226: score 402.2, E = 7.1e-118
                   *->MGvtcvlsvpvaeGKSvaqTideltrrLealGAvkqGtfsvdcetYk
                      MGvtcv+++pvaeGKSv+qT++ ltr+Le+lGA+kqGtf+vdcetY+
     ef06345    28    MGVTCVSQMPVAEGKSVQQTVELLTRKLEMLGAEKQGTFCVDCETYH 74   

                   pnpqsiGRsEHHnGniPqGaqElAeadnqgqpskllyvlhnseqPgscfs
                   +++++                     ++qgq++kl+yv+hnse+P+scf+
     ef06345    75 TAASTL--------------------GSQGQTGKLMYVMHNSEYPLSCFA 104  

                   iipksaieggpAEiLnGsEFsiPDsHLHqkqivlvaDsffdllmeKlkSy
                   +     +e+gp                     +l+aD++fd+lm+Klk++
     ef06345   105 L-----FENGP---------------------CLIADTNFDVLMVKLKGF 128  

                   ftskkalkiEsrGarYeLmGDeyGDFliRvGtVtmgtaEtfRGilvEVEY
                   f+s+ka kiE+rG+rY     +y+DFl++vGtVtmg   ++RGi+vEVEY
     ef06345   129 FQSAKASKIETRGTRY-----QYCDFLVKVGTVTMGP--SARGISVEVEY 171  

                   taCePcvspgdCwkLmeEFlqsflgsnvprslPsvFvnaelnfenssklp
                       Pcv+  dCw+L+ EFlqsflgs++p + P+vF          ++++
     ef06345   172 ---GPCVVASDCWSLLLEFLQSFLGSHTP-GAPAVF---------GNRHD 208  

                   diYtpldlvDTmvQYlelfak<-*
                     Y+p+   DTmvQY+elf+k   
     ef06345   209 AVYGPA---DTMVQYMELFNK    226  

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