hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-13100748/chunk_1/iprscan-20080808-13100748.nocrc
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Query sequence: eg00004
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF00270.19.ls DEAD/DEAH box helicase                       245.5    1.1e-70   1
PF00270.19.fs DEAD/DEAH box helicase                       243.6    3.8e-70   1
PF00271.21.fs Helicase conserved C-terminal domain          92.6      2e-26   1
PF00271.21.ls Helicase conserved C-terminal domain          94.6    2.8e-25   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF00270.19.fs   1/1     103   273 ..     1   213 []   243.6  3.8e-70
PF00270.19.ls   1/1     103   273 ..     1   213 []   245.5  1.1e-70
PF00271.21.fs   1/1     344   420 ..     1    76 []    92.6    2e-26
PF00271.21.ls   1/1     344   420 ..     1    76 []    94.6  2.8e-25

Alignments of top-scoring domains:
PF00270.19.fs: domain 1 of 1, from 103 to 273: score 243.6, E = 3.8e-70
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx
                   *->tpiQaeaipaileGrDvlvqApTGSGKTlafllPilqallk.pennq
                      t+iQ+++i ++l+G+Dvl++A+TGSGKTlafl P+l+al + +    
     eg00004   103    TEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRlQ---- 145  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   eskplkkkkdgpqalvlaPTreLaeQiyeelkklgkgiqpdleellglkv
                        ++++dg  +l+++PTreLa Q++e+l+k gk+        ++  +
     eg00004   146 -----WTSTDGLGVLIISPTRELAYQTFEVLRKVGKN--------HDFSA 182  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   allyGGdsikeqleklDYrlkkglkgkpdIlvgTPgrLldlllkgrkreg
                   +l++GG + k+++e++     ++    ++Ilv+TPgrLl ++    ++  
     eg00004   183 GLIIGGKDLKHEAERI-----NN----INILVCTPGRLLQHM---DET-V 219  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   asldlknlkllVlDEAhrlldmkGfgedleeilrrlprpklrrlsqdlpn
                   + ++  +l++lVlDEA+r+ldm Gf + +  ++++lp +k          
     eg00004   220 S-FHATDLQMLVLDEADRILDM-GFADTMNAVIENLP-KK---------- 256  

                RF xxxxxxxxxxxxxxxxx   
                   rqtllfSATlprnvedl<-*
                   rqtllfSAT +++v+dl   
     eg00004   257 RQTLLFSATQTKSVKDL    273  

PF00270.19.ls: domain 1 of 1, from 103 to 273: score 245.5, E = 1.1e-70
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx
                   *->tpiQaeaipaileGrDvlvqApTGSGKTlafllPilqallk.pennq
                      t+iQ+++i ++l+G+Dvl++A+TGSGKTlafl P+l+al + +    
     eg00004   103    TEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRlQ---- 145  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   eskplkkkkdgpqalvlaPTreLaeQiyeelkklgkgiqpdleellglkv
                        ++++dg  +l+++PTreLa Q++e+l+k gk+        ++  +
     eg00004   146 -----WTSTDGLGVLIISPTRELAYQTFEVLRKVGKN--------HDFSA 182  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   allyGGdsikeqleklDYrlkkglkgkpdIlvgTPgrLldlllkgrkreg
                   +l++GG + k+++e++     ++    ++Ilv+TPgrLl ++    ++  
     eg00004   183 GLIIGGKDLKHEAERI-----NN----INILVCTPGRLLQHM---DET-V 219  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   asldlknlkllVlDEAhrlldmkGfgedleeilrrlprpklrrlsqdlpn
                   + ++  +l++lVlDEA+r+ldm Gf + +  ++++lp +k          
     eg00004   220 S-FHATDLQMLVLDEADRILDM-GFADTMNAVIENLP-KK---------- 256  

                RF xxxxxxxxxxxxxxxxx   
                   rqtllfSATlprnvedl<-*
                   rqtllfSAT +++v+dl   
     eg00004   257 RQTLLFSATQTKSVKDL    273  

PF00271.21.fs: domain 1 of 1, from 344 to 420: score 92.6, E = 2e-26
                   *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
                         +pg+++++lhG+  q  R+e+ ++F + +  vL+aTd+a+rG+D
     eg00004   344    CRlRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLD 390  

                   ipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   +p+vn+V ++d+p +  +yi+R+GR++R +   
     eg00004   391 FPAVNWVLQFDCPEDANTYIHRAGRTARYK    420  

PF00271.21.ls: domain 1 of 1, from 344 to 420: score 94.6, E = 2.8e-25
                   *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
                         +pg+++++lhG+  q  R+e+ ++F + +  vL+aTd+a+rG+D
     eg00004   344    CRlRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLD 390  

                   ipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   +p+vn+V ++d+p +  +yi+R+GR++R +   
     eg00004   391 FPAVNWVLQFDCPEDANTYIHRAGRTARYK    420  

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