hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-13100748/chunk_1/iprscan-20080808-13100748.nocrc
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Query sequence: eg00004
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00487                                                 193.5      2e-53   1
SM00490                                                  97.0    2.2e-24   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00487      1/1      98   301 ..     1   219 []   193.5    2e-53
SM00490      1/1     337   420 ..     1    86 []    97.0  2.2e-24

Alignments of top-scoring domains:
SM00487: domain 1 of 1, from 98 to 301: score 193.5, E = 2e-53
                   *->gf.klrpyQkeaipwllegrdvilaapTGsGKTlafllpllellkkg
                       ++  +++Qk++i  +l+g+dv++aa+TGsGKTlafl p+le+l++ 
     eg00004    98    QYrLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRL 144  

                   kplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvvgl
                   ++++   ++g  vL+++PtreLa Q++e+l+k g++++      +   ++
     eg00004   145 QWTS---TDGLGVLIISPTRELAYQTFEVLRKVGKNHD------FSAGLI 185  

                   ygG.sktkekeqlrklksgktdilvtTpgrLldll.ngkglsl.nldlvi
                   +gG++    k++ +++ +   +ilv+TpgrLl+++++  +++ ++l++++
     eg00004   186 IGGkDL---KHEAERINNI--NILVCTPGRLLQHMdETVSFHAtDLQMLV 230  

                   lDEaHrlldmgsggdhgfgdqle.llkrlpknrqrlllSATpp.eienll
                   lDEa+r+ldm      gf+d+++ +++ lpk+rq+ll+SAT ++ +++l+
     eg00004   231 LDEADRILDM------GFADTMNaVIENLPKKRQTLLFSATQTkSVKDLA 274  

                   klflnlpelfpnpvfisvgf...tlepieqf<-*
                   +l l++p    ++v +  + + +t+  +eq    
     eg00004   275 RLSLKNP----EYVWVHEKAkysTPATLEQN    301  

SM00490: domain 1 of 1, from 337 to 420: score 97.0, E = 2.2e-24
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgkikvLva
                      + l++ + +l   pg+++++lHG+  q  R e+ ++F + +  vL+a
     eg00004   337    QYLYRVFCRLR--PGVSILALHGRQQQMRRMEVYNEFVRKRAAVLFA 381  

                   TdvaerGlDipgvdlVInydlpwspasyiQRiGRaGRaG<-*
                   Td+a+rGlD+p+v++V ++d+p +  +yi+R+GR++R++   
     eg00004   382 TDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYK    420  

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