hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-05083365/chunk_1/iprscan-20090618-05083365.nocrc
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Query sequence: eg00017
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF02816.8.fs Alpha-kinase family                        440.4   4.3e-156   1
PF02816.8.ls Alpha-kinase family                        442.2   6.5e-130   1
PF08238.2.fs Sel1 repeat                                 26.2    6.8e-07   4
PF08238.2.ls Sel1 repeat                                 23.4    0.00073   4

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF02816.8.ls   1/1     126   324 ..     1   241 []   442.2 6.5e-130
PF02816.8.fs   1/1     126   324 ..     1   241 []   440.4 4.3e-156
PF08238.2.fs   2/4     596   615 ..    31    58 .]    10.4    0.025
PF08238.2.ls   4/4     668   707 ..     1    58 []    12.1     0.45
PF08238.2.fs   4/4     668   707 ..     1    58 []    10.4    0.025

Alignments of top-scoring domains:
PF02816.8.ls: domain 1 of 1, from 126 to 324: score 442.2, E = 6.5e-130
                   *->stskWtqsevlvkleklstpfakGalReAfrvkklsqedDilKlgal
                      +t +W+ +evl+k++++  pf++Ga+Re+fr+kkls+          
     eg00017   126    VTGEWLDDEVLIKMASQ--PFGRGAMRECFRTKKLSN---------- 160  

                   fivksdlkevgryvsKiykeqtsrhlyFeDVqmQmaAkkwaeeFNqlKae
                   f++++ +k++++yv+K+y+e+++r++yFeDV++Qm+Ak+w+ee+N++K  
     eg00017   161 FLHAQQWKGASNYVAKRYIEPVDRDVYFEDVRLQMEAKLWGEEYNRHK-- 208  

                   qNiPpkkidflqscvveLiDrtgsgnGqgplcsiEpyieGeFrKYNnNsG
                      Ppk++d++q+c++eL+Dr+g+     pl+++E+yieG+++KYN+NsG
     eg00017   209 ---PPKQVDIMQMCIIELKDRPGK-----PLFHLEHYIEGKYIKYNSNSG 250  

                   denKEvfvstddaretpQAFSHFTYErSnhqllVvDlQGVgtGNGKGLdl
                         fv++d++r+tpQAFSHFT+ErS+hql+VvD+QGVg       dl
     eg00017   251 ------FVRDDNIRLTPQAFSHFTFERSGHQLIVVDIQGVG-------DL 287  

                   yTDPQIHTvdpKrSyGtgFGdgNLGerGiakFfNNatHkCNaiC<-*
                   yTDPQIHT+      Gt+FGdgNLG+rG+a+Ff  ++H+CN+iC   
     eg00017   288 YTDPQIHTET-----GTDFGDGNLGVRGMALFF--YSHACNRIC    324  

PF02816.8.fs: domain 1 of 1, from 126 to 324: score 440.4, E = 4.3e-156
                   *->stskWtqsevlvkleklstpfakGalReAfrvkklsqedDilKlgal
                      +t +W+ +evl+k++++  pf++Ga+Re+fr+kkls+          
     eg00017   126    VTGEWLDDEVLIKMASQ--PFGRGAMRECFRTKKLSN---------- 160  

                   fivksdlkevgryvsKiykeqtsrhlyFeDVqmQmaAkkwaeeFNqlKae
                   f++++ +k++++yv+K+y+e+++r++yFeDV++Qm+Ak+w+ee+N++K  
     eg00017   161 FLHAQQWKGASNYVAKRYIEPVDRDVYFEDVRLQMEAKLWGEEYNRHK-- 208  

                   qNiPpkkidflqscvveLiDrtgsgnGqgplcsiEpyieGeFrKYNnNsG
                      Ppk++d++q+c++eL+Dr+g+     pl+++E+yieG+++KYN+NsG
     eg00017   209 ---PPKQVDIMQMCIIELKDRPGK-----PLFHLEHYIEGKYIKYNSNSG 250  

                   denKEvfvstddaretpQAFSHFTYErSnhqllVvDlQGVgtGNGKGLdl
                         fv++d++r+tpQAFSHFT+ErS+hql+VvD+QGVg       dl
     eg00017   251 ------FVRDDNIRLTPQAFSHFTFERSGHQLIVVDIQGVG-------DL 287  

                   yTDPQIHTvdpKrSyGtgFGdgNLGerGiakFfNNatHkCNaiC<-*
                   yTDPQIHT+      Gt+FGdgNLG+rG+a+Ff  ++H+CN+iC   
     eg00017   288 YTDPQIHTET-----GTDFGDGNLGVRGMALFF--YSHACNRIC    324  

PF08238.2.fs: domain 2 of 4, from 596 to 615: score 10.4, E = 0.025
                   *->vpkdeivprDyekveAlkwyekAAeqGn<-*
                      +++      ++ k  ++ ++ kAAe+G+   
     eg00017   596    TEE------NKTK--GFDYLLKAAEAGD    615  

PF08238.2.ls: domain 4 of 4, from 668 to 707: score 12.1, E = 0.45
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                       + +++L+r      +++++G +     G   +k      D+++  +
     eg00017   668    EpRYMMLAR----EAEMLFTGGY-----G--LEK------DPQR--S 695  

                   lkwyekAAeqGn<-*
                     +y++AAe+     
     eg00017   696 GDLYTQAAEAAM    707  

PF08238.2.fs: domain 4 of 4, from 668 to 707: score 10.4, E = 0.025
                   *->a.AqynLGrmlewlyylylnGlggkgheGGvvpkdeivprDyekveA
                       + +++L+r      +++++G +     G   +k      D+++  +
     eg00017   668    EpRYMMLAR----EAEMLFTGGY-----G--LEK------DPQR--S 695  

                   lkwyekAAeqGn<-*
                     +y++AAe+     
     eg00017   696 GDLYTQAAEAAM    707  

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