hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-13225618/chunk_1/iprscan-20080808-13225618.nocrc
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Query sequence: eg00089
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00621.11.fs RhoGEF domain                                   74.8    6.8e-22   1
PF00621.11.ls RhoGEF domain                                   76.6    7.1e-20   1
PF00169.19.fs PH domain                                       40.7    6.2e-12   1
PF00130.12.fs Phorbol esters/diacylglycerol binding domain    41.1    1.1e-10   1
PF00130.12.ls Phorbol esters/diacylglycerol binding domain    43.0    9.2e-10   1
PF00169.19.ls PH domain                                       42.7    1.1e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00130.12.fs   1/1     694   744 ..     1    55 []    41.1  1.1e-10
PF00130.12.ls   1/1     694   744 ..     1    55 []    43.0  9.2e-10
PF00621.11.fs   1/1     894  1084 ..     1   207 []    74.8  6.8e-22
PF00621.11.ls   1/1     894  1084 ..     1   207 []    76.6  7.1e-20
PF00169.19.fs   1/1    1128  1229 ..     1    92 []    40.7  6.2e-12
PF00169.19.ls   1/1    1128  1229 ..     1    92 []    42.7  1.1e-09

Alignments of top-scoring domains:
PF00130.12.fs: domain 1 of 1, from 694 to 744: score 41.1, E = 1.1e-10
                   *->HhFvhrwtfkqptfCdhCgeflwgslgkqGlkCswCklnvHkrChek
                      H+F ++ tf +   C +C++ l   lgk  l+Cs+C+ nvHk C   
     eg00089   694    HQFAPG-TFSGVLQCLVCDKTL---LGKESLQCSNCNANVHKGCKDA 736  

                   VppeCgcg<-*
                   +p++ +     
     eg00089   737 APACTKKF    744  

PF00130.12.ls: domain 1 of 1, from 694 to 744: score 43.0, E = 9.2e-10
                   *->HhFvhrwtfkqptfCdhCgeflwgslgkqGlkCswCklnvHkrChek
                      H+F ++ tf +   C +C++ l   lgk  l+Cs+C+ nvHk C   
     eg00089   694    HQFAPG-TFSGVLQCLVCDKTL---LGKESLQCSNCNANVHKGCKDA 736  

                   VppeCgcg<-*
                   +p++ +     
     eg00089   737 APACTKKF    744  

PF00621.11.fs: domain 1 of 1, from 894 to 1084: score 74.8, E = 6.8e-22
                   *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF
                      v++El++TE   +++L i +  ++k ++e+       L++ +++ iF
     eg00089   894    VIFELMQTEMHHIQTLFIMSEIFRKGMKEEL-----QLDHSTVDKIF 935  

                   sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk
                   +++ +++e+hr+F+  s+++r ++s               r+Gd++ + +
     eg00089   936 PCLDELLEIHRHFFY-SMKERRQES----CAGSDRNFVIDRIGDILVQQF 980  

                   ae.....flqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassn
                   +e++ +++ ++Yge+c +++ A++l +     ++n +F++f++ +  + +
     eg00089   981 SEenaskMKKIYGEFCCHHKEAVNLFKE---LQQNKKFQNFIKLRNSNLL 1027 

                   tgAkddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLk
                           +++++  +l   qRi++Yp L+  +L +t+e    +e++dL+
     eg00089  1028 AR------RRGIPECILLVTQRITKYPVLVERILQYTKE--RTEEHKDLR 1069 

                   kaldalqdlaksiNe<-*
                   kal +++d++  ++    
     eg00089  1070 KALCLIKDMIATVDL    1084 

PF00621.11.ls: domain 1 of 1, from 894 to 1084: score 76.6, E = 7.1e-20
                   *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF
                      v++El++TE   +++L i +  ++k ++e+       L++ +++ iF
     eg00089   894    VIFELMQTEMHHIQTLFIMSEIFRKGMKEEL-----QLDHSTVDKIF 935  

                   sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk
                   +++ +++e+hr+F+  s+++r ++s               r+Gd++ + +
     eg00089   936 PCLDELLEIHRHFFY-SMKERRQES----CAGSDRNFVIDRIGDILVQQF 980  

                   ae.....flqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassn
                   +e++ +++ ++Yge+c +++ A++l +     ++n +F++f++ +  + +
     eg00089   981 SEenaskMKKIYGEFCCHHKEAVNLFKE---LQQNKKFQNFIKLRNSNLL 1027 

                   tgAkddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLk
                           +++++  +l   qRi++Yp L+  +L +t+e    +e++dL+
     eg00089  1028 AR------RRGIPECILLVTQRITKYPVLVERILQYTKE--RTEEHKDLR 1069 

                   kaldalqdlaksiNe<-*
                   kal +++d++  ++    
     eg00089  1070 KALCLIKDMIATVDL    1084 

PF00169.19.fs: domain 1 of 1, from 1128 to 1229: score 40.7, E = 6.2e-12
                   *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk........kkpk
                      + + G ++ k++ +++k+  + L +dvLl+ ++k+++      + + 
     eg00089  1128    LLYDGLVYWKTATGRFKDILALLLTDVLLFLQEKDqkyifaavDQKP 1174 

                   gsipLsgiqvtkvpdnkrkncFeirt.dr..etlllqaeseeerkeWvka
                    +i+L+++  ++v +  ++ +F i+ ++ ++e ++++++s+eer+ W++ 
     eg00089  1175 SVISLQKLIAREVANE-ERGMFLISAsSAgpEMYEIHTNSKEERNNWMRR 1223 

                   iqsair<-*
                   iq+a+    
     eg00089  1224 IQQAVE    1229 

PF00169.19.ls: domain 1 of 1, from 1128 to 1229: score 42.7, E = 1.1e-09
                   *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk........kkpk
                      + + G ++ k++ +++k+  + L +dvLl+ ++k+++      + + 
     eg00089  1128    LLYDGLVYWKTATGRFKDILALLLTDVLLFLQEKDqkyifaavDQKP 1174 

                   gsipLsgiqvtkvpdnkrkncFeirt.dr..etlllqaeseeerkeWvka
                    +i+L+++  ++v +  ++ +F i+ ++ ++e ++++++s+eer+ W++ 
     eg00089  1175 SVISLQKLIAREVANE-ERGMFLISAsSAgpEMYEIHTNSKEERNNWMRR 1223 

                   iqsair<-*
                   iq+a+    
     eg00089  1224 IQQAVE    1229 

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