hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-13225618/chunk_1/iprscan-20080808-13225618.nocrc
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Query sequence: eg00089
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00325                                                 206.8    1.9e-57   1
SM00109                                                  51.8    8.6e-11   1
SM00233                                                  47.3    2.1e-09   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00109     1/1     694   740 ..     1    61 []    51.8  8.6e-11
SM00325     1/1     894  1084 ..     1   211 []   206.8  1.9e-57
SM00233     1/1    1128  1231 ..     1    82 []    47.3  2.1e-09

Alignments of top-scoring domains:
SM00109: domain 1 of 1, from 694 to 740: score 51.8, E = 8.6e-11
                   *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC
                      H+f  +tf++   C vC+k++ g         +l+Cs+C+ ++Hk C
     eg00089   694    HQFAPGTFsGVLQCLVCDKTLLGKE-------SLQCSNCNANVHKGC 733  

                   aekvpaqshksglsC<-*
                   ++ +p        +C   
     eg00089   734 KDAAP--------AC    740  

SM00325: domain 1 of 1, from 894 to 1084: score 206.8, E = 1.9e-57
                   *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl
                      v++EL+qTE +++++L i+ e+f+k +k+e++      l+++ v+++
     eg00089   894    VIFELMQTEMHHIQTLFIMSEIFRKGMKEELQ------LDHSTVDKI 934  

                   FgpNieeiyefHrrFLdeLeerveewllskdl.Ksernsviedsgerigd
                   F+ +++e++e+Hr+F+ +++er++e+     + +s+rn+vi+ +g+ + +
     eg00089   935 FP-CLDELLEIHRHFFYSMKERRQES-----CaGSDRNFVIDRIGDILVQ 978  

                   vFlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeies
                   +F+++ +a++++kiY+e+c +h++a++l+k+L   ++n++Fq f+k + s
     eg00089   979 QFSEE-NASKMKKIYGEFCCHHKEAVNLFKEL---QQNKKFQNFIKLRNS 1024 

                   kpncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLk
                   +   r     r++++++++++ QR+tkYp L++++l++t++  e+++dL 
     eg00089  1025 NLLAR-----RRGIPECILLVTQRITKYPVLVERILQYTKERTEEHKDLR 1069 

                   kAleaikelasqvNe<-*
                   kAl +ik++++ v+    
     eg00089  1070 KALCLIKDMIATVDL    1084 

SM00233: domain 1 of 1, from 1128 to 1231: score 47.3, E = 2.1e-09
                   *->vikeGwLlkks.k.swkkryfvLfngvLlyyksk..........kpk
                      +++ G +++k+  +++k+  + L ++vLl+ ++k+++      + + 
     eg00089  1128    LLYDGLVYWKTaTgRFKDILALLLTDVLLFLQEKdqkyifaavdQKP 1174 

                   gsipLsgcsvre.p.....cFeivt.dr...tlllqAeseeereeWveal
                    +i+L++++ re +++++++F i+ ++ +++ ++++++s+eer+ W++ +
     eg00089  1175 SVISLQKLIAREvAneergMFLISAsSAgpeMYEIHTNSKEERNNWMRRI 1224 

                   qsaiaka<-*
                   q+a++++   
     eg00089  1225 QQAVESC    1231 

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