hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-13291740/chunk_1/iprscan-20080808-13291740.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: eg00157 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00431.11.fs CUB domain 300.8 6.3e-91 2 PF00431.11.ls CUB domain 304.7 1.6e-88 2 PF00754.15.ls F5/8 type C domain 258.1 1.7e-74 2 PF00754.15.fs F5/8 type C domain 255.8 8.5e-74 3 PF00629.13.ls MAM domain 190.3 4.3e-54 1 PF00629.13.fs MAM domain 188.5 1.5e-53 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00431.11.fs 1/2 52 163 .. 1 116 [] 153.3 3.6e-46 PF00431.11.ls 1/2 52 163 .. 1 116 [] 155.2 1.6e-43 PF00431.11.ls 2/2 173 288 .. 1 116 [] 149.5 8.4e-42 PF00431.11.fs 2/2 173 288 .. 1 116 [] 147.5 2e-44 PF00754.15.ls 1/2 316 448 .. 1 163 [] 138.6 1.6e-38 PF00754.15.fs 2/3 316 448 .. 1 163 [] 136.8 2.5e-38 PF00754.15.fs 3/3 473 613 .. 1 163 [] 117.6 6.8e-33 PF00754.15.ls 2/2 473 613 .. 1 163 [] 119.5 9.1e-33 PF00629.13.fs 1/1 670 826 .. 1 180 [] 188.5 1.5e-53 PF00629.13.ls 1/1 670 826 .. 1 180 [] 190.3 4.3e-54 Alignments of top-scoring domains: PF00431.11.fs: domain 1 of 2, from 52 to 163: score 153.3, E = 3.6e-46 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrap.pgyrvisLt CGg+l + G+ItSP+YP +Yp +++C+W++ ap+p+++ i L+ eg00157 52 CGGRL-NSKDAGYITSPGYPQ-DYPSHQNCEWIVYAPePNQK-IVLN 95 Fqd.FdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsn F ++F++E+hd C+YD++EirDG+++s+ llG+ CG +P++i+S+++ eg00157 96 FNPhFEIEKHD--CKYDFIEIRDGDSESADLLGKHCG-NIAPPTIISSGS 142 qmtikFvsDssiqkrGFkaty<-* +++ikF+sD+ q++GF+++y eg00157 143 MLYIKFTSDYARQGAGFSLRY 163 PF00431.11.ls: domain 1 of 2, from 52 to 163: score 155.2, E = 1.6e-43 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrap.pgyrvisLt CGg+l + G+ItSP+YP +Yp +++C+W++ ap+p+++ i L+ eg00157 52 CGGRL-NSKDAGYITSPGYPQ-DYPSHQNCEWIVYAPePNQK-IVLN 95 Fqd.FdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsn F ++F++E+hd C+YD++EirDG+++s+ llG+ CG +P++i+S+++ eg00157 96 FNPhFEIEKHD--CKYDFIEIRDGDSESADLLGKHCG-NIAPPTIISSGS 142 qmtikFvsDssiqkrGFkaty<-* +++ikF+sD+ q++GF+++y eg00157 143 MLYIKFTSDYARQGAGFSLRY 163 PF00431.11.ls: domain 2 of 2, from 173 to 288: score 149.5, E = 8.4e-42 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF C+ + +t+++G+I SP++P+ +Yp n +C+ tI a+p i L+F eg00157 173 CSKN--FTSPNGTIESPGFPE-KYPHNLDCTFTILAKPKME-IILQF 215 qdFdlEdhdga.....CgYDyVEirDGlpssspllGrfCGgsgiPedirS + FdlE ++ ++++C+YD++ i+DG p ++pl+G++CG + P rS eg00157 216 LIFDLEHDPLQvgegdCKYDWLDIWDGIPHVGPLIGKYCG-TKTPSELRS 264 tsnqmtikFvsDssiqkrGFkaty<-* ++ ++ ++F++D ++k GF+a+y eg00157 265 STGILSLTFHTDMAVAKDGFSARY 288 PF00431.11.fs: domain 2 of 2, from 173 to 288: score 147.5, E = 2e-44 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF C+ + +t+++G+I SP++P+ +Yp n +C+ tI a+p i L+F eg00157 173 CSKN--FTSPNGTIESPGFPE-KYPHNLDCTFTILAKPKME-IILQF 215 qdFdlEdhdga.....CgYDyVEirDGlpssspllGrfCGgsgiPedirS + FdlE ++ ++++C+YD++ i+DG p ++pl+G++CG + P rS eg00157 216 LIFDLEHDPLQvgegdCKYDWLDIWDGIPHVGPLIGKYCG-TKTPSELRS 264 tsnqmtikFvsDssiqkrGFkaty<-* ++ ++ ++F++D ++k GF+a+y eg00157 265 STGILSLTFHTDMAVAKDGFSARY 288 PF00754.15.ls: domain 1 of 2, from 316 to 448: score 138.6, E = 1.6e-38 *->qitaSseesgsggagrarLwspaaaalDGngntyghsvspstaWsse qi+aSs++s++ w+p + +l+G+ ++W++ eg00157 316 QISASSTYSDGR-------WTPQQSRLHGDD----------NGWTP- 344 kwsggaknndapqwlqvDLgkpkkitgvvtqgrqdggn...gyvksYkiq + ++++++lqvDL + +t++ tqg+ + ++++++yvksYk++ eg00157 345 NL------DSNKEYLQVDLRFLTMLTAIATQGAISRETqngYYVKSYKLE 388 ySdDGseevnWttvkdgedilsdsgg.pkiF.gn.dnd.pvknlfdppik +S++G e +W ++ g ++k+F++n+d++++v n + +p eg00157 389 VSTNG-E--DWMVYRH--------GKnHKVFqANnDATeVVLNKLHAPLL 427 ARYvRivptswnggggiasraEl<-* +R+vRi p++w + gia+r El eg00157 428 TRFVRIRPQTW--HSGIALRLEL 448 PF00754.15.fs: domain 2 of 3, from 316 to 448: score 136.8, E = 2.5e-38 *->qitaSseesgsggagrarLwspaaaalDGngntyghsvspstaWsse qi+aSs++s++ w+p + +l+G+ ++W++ eg00157 316 QISASSTYSDGR-------WTPQQSRLHGDD----------NGWTP- 344 kwsggaknndapqwlqvDLgkpkkitgvvtqgrqdggn...gyvksYkiq + ++++++lqvDL + +t++ tqg+ + ++++++yvksYk++ eg00157 345 NL------DSNKEYLQVDLRFLTMLTAIATQGAISRETqngYYVKSYKLE 388 ySdDGseevnWttvkdgedilsdsgg.pkiF.gn.dnd.pvknlfdppik +S++G e +W ++ g ++k+F++n+d++++v n + +p eg00157 389 VSTNG-E--DWMVYRH--------GKnHKVFqANnDATeVVLNKLHAPLL 427 ARYvRivptswnggggiasraEl<-* +R+vRi p++w + gia+r El eg00157 428 TRFVRIRPQTW--HSGIALRLEL 448 PF00754.15.fs: domain 3 of 3, from 473 to 613: score 117.6, E = 6.8e-33 *->qitaSseesgsggagrarLwspaaaalDGngntyghsvspstaWsse qi+aSs++ + wsp aa+l + ++W + eg00157 473 QISASSTQEYL--------WSPSAARLVSSR----------SGWFP- 500 kwsggaknndapqwlqvDLgkpkkitgvvtqgrqdggn.......gyvks ++ +++ +wlqvDLg pk++ gv++qg+++g++ + + +++v++ eg00157 501 RIPQA---QPGEEWLQVDLGTPKTVKGVIIQGARGGDSitavearAFVRK 547 YkiqySdDGseevnWttvkdgedilsdsgg.pkiF.gn.dnd.pvknlfd +k++yS++G + +W + d + +++pk F+gn +d+p + eg00157 548 FKVSYSLNG-K--DWEYIQD------PRTQqPKLFeGNmHYDtPDI-RRF 587 ppikARYvRivptswnggggiasraEl<-* pi A+YvR++p w + gi++r E+ eg00157 588 DPIPAQYVRVYPERW-SPAGIGMRLEV 613 PF00754.15.ls: domain 2 of 2, from 473 to 613: score 119.5, E = 9.1e-33 *->qitaSseesgsggagrarLwspaaaalDGngntyghsvspstaWsse qi+aSs++ + wsp aa+l + ++W + eg00157 473 QISASSTQEYL--------WSPSAARLVSSR----------SGWFP- 500 kwsggaknndapqwlqvDLgkpkkitgvvtqgrqdggn.......gyvks ++ +++ +wlqvDLg pk++ gv++qg+++g++ + + +++v++ eg00157 501 RIPQA---QPGEEWLQVDLGTPKTVKGVIIQGARGGDSitavearAFVRK 547 YkiqySdDGseevnWttvkdgedilsdsgg.pkiF.gn.dnd.pvknlfd +k++yS++G + +W + d + +++pk F+gn +d+p + eg00157 548 FKVSYSLNG-K--DWEYIQD------PRTQqPKLFeGNmHYDtPDI-RRF 587 ppikARYvRivptswnggggiasraEl<-* pi A+YvR++p w + gi++r E+ eg00157 588 DPIPAQYVRVYPERW-SPAGIGMRLEV 613 PF00629.13.fs: domain 1 of 1, from 670 to 826: score 188.5, E = 1.5e-53 *->CdFdwdEeedhPlCgWtqdstdgfdgWtrqsgatptsstGPpgDHtm C+Fd+ Ee +CgW+ d++ + W r+ t+ ss+ P+ + eg00157 670 CNFDFLEE----PCGWMYDHA---K-WLRT---TWASSSSPNDRTF- 704 fqnngsGhYmyvetsdlgqeGqkArLlSPplsppgsacClsFwYhmyGsg +++ ++++++++ + +eGq ArL+SPp++ p+s++C++F+Y+ G eg00157 705 ---PDDRNFLRLQSD-SQREGQYARLISPPVHLPRSPVCMEFQYQATGGR 750 ksvgtLnvyvreegesekdpvllWsrsGsqgpnWleaevtvnllksekpf + L+v+ + ++es+ lW+++++qg++W++++++ l+++++++ eg00157 751 --GVALQVVREASQESKL----LWVIREDQGGEWKHGRII--LPSYDMEY 792 qviFEgvrglpgsaGdIAlDDIsi.ndis.gpCpe<-* q++FEgv+g +g +G+IA+DDI+i++d++ ++C+e eg00157 793 QIVFEGVIG-KGRSGEIAIDDIRIsTDVPlENCME 826 PF00629.13.ls: domain 1 of 1, from 670 to 826: score 190.3, E = 4.3e-54 *->CdFdwdEeedhPlCgWtqdstdgfdgWtrqsgatptsstGPpgDHtm C+Fd+ Ee +CgW+ d++ + W r+ t+ ss+ P+ + eg00157 670 CNFDFLEE----PCGWMYDHA---K-WLRT---TWASSSSPNDRTF- 704 fqnngsGhYmyvetsdlgqeGqkArLlSPplsppgsacClsFwYhmyGsg +++ ++++++++ + +eGq ArL+SPp++ p+s++C++F+Y+ G eg00157 705 ---PDDRNFLRLQSD-SQREGQYARLISPPVHLPRSPVCMEFQYQATGGR 750 ksvgtLnvyvreegesekdpvllWsrsGsqgpnWleaevtvnllksekpf + L+v+ + ++es+ lW+++++qg++W++++++ l+++++++ eg00157 751 --GVALQVVREASQESKL----LWVIREDQGGEWKHGRII--LPSYDMEY 792 qviFEgvrglpgsaGdIAlDDIsi.ndis.gpCpe<-* q++FEgv+g +g +G+IA+DDI+i++d++ ++C+e eg00157 793 QIVFEGVIG-KGRSGEIAIDDIRIsTDVPlENCME 826 //