hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-13291740/chunk_1/iprscan-20080808-13291740.nocrc
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Query sequence: eg00157
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00042                                                 317.3      1e-90   2
SM00231                                                 240.8    1.1e-67   2
SM00137                                                 200.5    1.5e-55   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00042    1/2      52   166 ..     1   144 []   167.0  1.8e-45
SM00042    2/2     173   291 ..     1   144 []   150.3    2e-40
SM00231    1/2     300   451 ..     1   199 []   172.0    6e-47
SM00231    2/2     457   616 ..     1   199 []    68.9  6.6e-16
SM00137    1/1     665   826 ..     1   192 []   200.5  1.5e-55

Alignments of top-scoring domains:
SM00042: domain 1 of 2, from 52 to 166: score 167.0, E = 1.8e-45
                   *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG
                      CGg+l+  +      G+itSP+YP++     Yp++++C+W++ ap+ 
     eg00157    52    CGGRLNSKDA-----GYITSPGYPQD-----YPSHQNCEWIVYAPEP 88   

                   y.rieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspll
                   +++i L+F +h  F++E +d          C yD++ei+DG+s +s+ ll
     eg00157    89 NqKIVLNFNPH--FEIEKHD----------CKYDFIEIRDGDS-ESADLL 125  

                   GntearfCGse..p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsa
                   G    + CG++ +p+iisS +++++++F sD+  q     + GFs+rY++
     eg00157   126 G----KHCGNIapPtIISS-GSMLYIKFTSDYARQ-----GAGFSLRYEI 165  

                   v<-*
                   +   
     eg00157   166 F    166  

SM00042: domain 2 of 2, from 173 to 291: score 150.3, E = 2e-40
                   *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG
                      C+ ++t ++      Gti+SP++P++     Yp nl+C++tI a+p 
     eg00157   173    CSKNFTSPN------GTIESPGFPEK-----YPHNLDCTFTILAKPK 208  

                   yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG
                   + i+L+F     FdlE ++ ++g++   +C yD++ i+DG   + +pl+G
     eg00157   209 MEIILQFLI---FDLEHDPLQVGEG---DCKYDWLDIWDGIP-HVGPLIG 251  

                   ntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav<
                       ++CG+++p+ ++Ss+  + +tF++D  v      k GFsarY+ v 
     eg00157   252 ----KYCGTKtPsELRSSTGILSLTFHTDMAVA-----KDGFSARYYLV  291  

                   -*
                     
     eg00157     -    -    

SM00231: domain 1 of 2, from 300 to 451: score 172.0, E = 6e-47
                   *->eCneplGleggeiadsqitassstgaarelgllgwaakiaRlngngl
                      +Cn+plG+e+g+ia++qi ass ++++r      w++   Rl+    
     eg00157   300    QCNVPLGMESGRIANEQISASSTYSDGR------WTPQQSRLH---- 336  

                   nedygdgaWcpaknsledgifdtddphwilvDLgrklrtvtgv.TitGrr
                      ++d++W+p  +s+          + ++vDL+  l+++t++ T++++ 
     eg00157   337 ---GDDNGWTPNLDSN---------KEYLQVDLRF-LTMLTAIaTQGAI- 372  

                   rrgdgngngdwvtyyvvaykddrrdllerlnGetWttykdfdiengtges
                         +++++++yyv+ yk+++++++e     +W++y++++      ++
     eg00157   373 ------SRETQNGYYVKSYKLEVSTNGE-----DWMVYRHGK------NH 405  

                   kvFggNadagtvvlndfppPivARYvRilPtaentratgwhngiilRlEL
                   kvF +N+da+ vvln++++P+ +R+vRi P +       wh gi+lRlEL
     eg00157   406 KVFQANNDATEVVLNKLHAPLLTRFVRIRPQT-------WHSGIALRLEL 448  

                   lGC<-*
                   +GC   
     eg00157   449 FGC    451  

SM00231: domain 2 of 2, from 457 to 616: score 68.9, E = 6.6e-16
                   *->eCneplGleggeiadsqitassstgaarelgllgwaakiaRlngngl
                      +C  +lG+ +g iadsqi ass ++       + w +  aRl    +
     eg00157   457    PCSNMLGMLSGLIADSQISASSTQE-------YLWSPSAARLVS--S 494  

                   nedygdgaWcpaknsledgifdtddphwilvDLgrklrtvtgvTitGrrr
                          +W p  +    g       +w++vDLg++  tv gv i+    
     eg00157   495 -----RSGWFPRIPQAQPG------EEWLQVDLGTP-KTVKGV-IIQG-- 529  

                   rgdgngngdwvtyyvvaykddrrdlle.r.lnGetWttykdfdiengtge
                        ++g++  + v+  +  +r    + +lnG++W +++d      t  
     eg00157   530 -----ARGGDSITAVE-ARAFVRKFKVsYsLNGKDWEYIQDPR----TQQ 569  

                   skvFggNadagtvvlndfppPivARYvRilPtaentratgwhngiilRlE
                   +k+F+gN   +t+ +  f+p i A+YvR++P ++       ++gi++RlE
     eg00157   570 PKLFEGNMHYDTPDIRRFDP-IPAQYVRVYPERW------SPAGIGMRLE 612  

                   LlGC<-*
                   +lGC   
     eg00157   613 VLGC    616  

SM00137: domain 1 of 1, from 665 to 826: score 200.5, E = 1.5e-55
                   *->tsegnCdFEegndktlCgwhqdsnddtGgeWervssatrifsamsat
                      +s++nC+F++ ++  +Cgw++d++++  ++ ++ ss           
     eg00157   665    PSGFNCNFDFLEE--PCGWMYDHAKW--LRTTWASSSS--------- 698  

                   gpnrDhttgnglGhymfvetssgkeggqtArLlSpplkenrsthCltFwY
                    pn + + ++   +++ ++++s +e gq ArL+Spp++ +rs  C++F+Y
     eg00157   699 -PNDRTFPDDR--NFLRLQSDSQRE-GQYARLISPPVHLPRSPVCMEFQY 744  

                   ymySrgGsgvgteLnvyvrpensgeqdteklvllWsrsGtqggqWlqaev
                   + +   G+++++ L+v vr  +++++ +    llW ++++qgg+W+++++
     eg00157   745 QAT---GGRGVA-LQV-VR--EASQESK----LLWVIREDQGGEWKHGRI 783  

                   alstgfspqpfqVvFegtrgskgssGyIALDDIllsngps.eeCgk<-*
                    l++  +++++q+vFeg++g kg+sG IA+DDI++s++++ e+C++   
     eg00157   784 ILPS--YDMEYQIVFEGVIG-KGRSGEIAIDDIRISTDVPlENCME    826  

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