# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Oeg00407.fasta.nr -Q eg00407.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 eg00407, 382 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6816517 sequences Expectation_n fit: rho(ln(x))= 4.8788+/-0.000191; mu= 13.0462+/- 0.011 mean_var=88.2933+/-16.770, 0's: 41 Z-trim: 96 B-trim: 14 in 1/65 Lambda= 0.136493 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62089356|dbj|BAD93122.1| ret finger protein iso ( 382) 2619 525.4 6.7e-147 gi|114606124|ref|XP_001140726.1| PREDICTED: ret fi ( 584) 2543 510.7 2.8e-142 gi|109070090|ref|XP_001094465.1| PREDICTED: ret fi ( 720) 2341 471.0 3.1e-130 gi|47122750|gb|AAH69924.1| Tripartite motif-contai ( 604) 2136 430.5 3.9e-118 gi|340026|gb|AAA36786.1| tyrosine kinase ( 805) 2123 428.1 2.8e-117 gi|12275876|gb|AAG50173.1|AF230394_1 tripartite mo ( 358) 2106 424.4 1.7e-116 gi|44890750|gb|AAH66924.1| Tripartite motif-contai ( 513) 2106 424.6 2.1e-116 gi|132517|sp|P14373|TRI27_HUMAN Zinc finger protei ( 513) 2106 424.6 2.1e-116 gi|30583897|gb|AAP36197.1| Homo sapiens ret finger ( 514) 2106 424.6 2.1e-116 gi|123980158|gb|ABM81908.1| ret finger protein [sy ( 513) 2096 422.6 8.2e-116 gi|94534966|gb|AAI16114.1| Tripartite motif-contai ( 513) 2092 421.8 1.4e-115 gi|50403687|sp|Q62158|TRI27_MOUSE Zinc finger prot ( 513) 2078 419.0 9.6e-115 gi|26353124|dbj|BAC40192.1| unnamed protein produc ( 513) 2078 419.0 9.6e-115 gi|1161122|gb|AAA85354.1| ret finger protein ( 522) 2078 419.1 9.7e-115 gi|149029267|gb|EDL84534.1| tripartite motif prote ( 513) 2055 414.5 2.2e-113 gi|406748|emb|CAA53092.1| zinc finger protein [Mus ( 506) 2022 408.0 2e-111 gi|168983888|emb|CAQ10095.1| tripartite motif-cont ( 249) 1723 348.8 6.5e-94 gi|148700723|gb|EDL32670.1| tripartite motif prote ( 250) 1695 343.3 3e-92 gi|149029268|gb|EDL84535.1| tripartite motif prote ( 250) 1672 338.7 6.9e-91 gi|148700724|gb|EDL32671.1| tripartite motif prote ( 473) 1504 306.0 9.6e-81 gi|149029266|gb|EDL84533.1| tripartite motif prote ( 246) 1476 300.1 2.8e-79 gi|194223169|ref|XP_001492586.2| PREDICTED: simila ( 377) 1070 220.4 4.4e-55 gi|148356959|dbj|BAF62983.1| Tripartite motif prot ( 588) 840 175.3 2.6e-41 gi|169730354|gb|ACA64755.1| tripartite motif prote ( 477) 838 174.8 2.9e-41 gi|148356962|dbj|BAF62986.1| hypothetical protein ( 476) 783 164.0 5.3e-38 gi|53135665|emb|CAG32446.1| hypothetical protein [ ( 410) 765 160.4 5.6e-37 gi|148356961|dbj|BAF62985.1| Tripartite motif prot ( 463) 765 160.4 6.1e-37 gi|169730356|gb|ACA64757.1| tripartite motif prote ( 463) 751 157.7 4.1e-36 gi|73975418|ref|XP_848259.1| PREDICTED: similar to ( 468) 748 157.1 6.2e-36 gi|169730357|gb|ACA64758.1| tripartite motif prote ( 476) 747 156.9 7.2e-36 gi|117306598|gb|AAI26549.1| Tripartite motif-conta ( 468) 743 156.1 1.2e-35 gi|58761175|gb|AAW82327.1| TRIM27 [Gallus gallus] ( 495) 743 156.1 1.3e-35 gi|148356964|dbj|BAF62988.1| Tripartite motif prot ( 495) 743 156.1 1.3e-35 gi|109017929|ref|XP_001082465.1| PREDICTED: simila ( 468) 739 155.3 2.1e-35 gi|149412073|ref|XP_001509541.1| PREDICTED: simila ( 527) 738 155.2 2.6e-35 gi|26400672|sp|Q96F44|TRI11_HUMAN Tripartite motif ( 468) 737 154.9 2.8e-35 gi|22760588|dbj|BAC11254.1| unnamed protein produc ( 385) 735 154.4 3.2e-35 gi|189069463|dbj|BAG37129.1| unnamed protein produ ( 468) 735 154.5 3.7e-35 gi|169730359|gb|ACA64760.1| tripartite motif prote ( 495) 730 153.6 7.6e-35 gi|26400680|sp|Q99PQ2|TRI11_MOUSE Tripartite motif ( 467) 714 150.4 6.5e-34 gi|169642491|gb|AAI60894.1| Trim11 protein [Rattus ( 467) 712 150.0 8.5e-34 gi|73975416|ref|XP_539324.2| PREDICTED: similar to ( 486) 686 144.9 3e-32 gi|123273861|emb|CAM24488.1| tripartite motif prot ( 253) 681 143.6 3.9e-32 gi|56805541|dbj|BAD83391.1| tripartite motif-conta ( 407) 680 143.6 6.1e-32 gi|149754698|ref|XP_001495133.1| PREDICTED: simila ( 481) 680 143.7 6.8e-32 gi|47117344|sp|O19085|TRI10_PIG Tripartite motif-c ( 482) 680 143.7 6.8e-32 gi|55666436|emb|CAH71674.1| tripartite motif-conta ( 357) 678 143.2 7.3e-32 gi|38605530|sp|Q9Y577|TRI17_HUMAN Tripartite motif ( 477) 672 142.1 2e-31 gi|73975434|ref|XP_539323.2| PREDICTED: similar to ( 513) 672 142.2 2.1e-31 gi|126309593|ref|XP_001375235.1| PREDICTED: simila ( 481) 670 141.8 2.7e-31 >>gi|62089356|dbj|BAD93122.1| ret finger protein isoform (382 aa) initn: 2619 init1: 2619 opt: 2619 Z-score: 2792.5 bits: 525.4 E(): 6.7e-147 Smith-Waterman score: 2619; 100.000% identity (100.000% similar) in 382 aa overlap (1-382:1-382) 10 20 30 40 50 60 eg0040 GAQAQASARPLQAFGARARLGYGPGRRRPPSARCLSGTANRRERRRVGLSAELGAGAHAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GAQAQASARPLQAFGARARLGYGPGRRRPPSARCLSGTANRRERRRVGLSAELGAGAHAR 10 20 30 40 50 60 70 80 90 100 110 120 eg0040 APPQAGAMASGSVAECLQQETTCPVCLQYFAEPMMLDCGHNICCACLARCWGTAETNVSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 APPQAGAMASGSVAECLQQETTCPVCLQYFAEPMMLDCGHNICCACLARCWGTAETNVSC 70 80 90 100 110 120 130 140 150 160 170 180 eg0040 PQCRETFPQRHMRPNRHLANVTQLVKQLRTERPSGPGGEMGVCEKHREPLKLYCEEDQMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 PQCRETFPQRHMRPNRHLANVTQLVKQLRTERPSGPGGEMGVCEKHREPLKLYCEEDQMP 130 140 150 160 170 180 190 200 210 220 230 240 eg0040 ICVVCDRSREHRGHSVLPLEEAVEGFKEQIQNQLDHLKRVKDLKKRRRAQGEQARAELLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 ICVVCDRSREHRGHSVLPLEEAVEGFKEQIQNQLDHLKRVKDLKKRRRAQGEQARAELLS 190 200 210 220 230 240 250 260 270 280 290 300 eg0040 LTQMEREKIVWEFEQLYHSLKEHEYRLLARLEELDLAIYNSINGAITQFSCNISHLSSLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LTQMEREKIVWEFEQLYHSLKEHEYRLLARLEELDLAIYNSINGAITQFSCNISHLSSLI 250 260 270 280 290 300 310 320 330 340 350 360 eg0040 AQLEEKQQQPTRELLQDIGDTLSRAERIRIPEPWITPPDLQEKIHIFAQKCLFLTESLKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 AQLEEKQQQPTRELLQDIGDTLSRAERIRIPEPWITPPDLQEKIHIFAQKCLFLTESLKQ 310 320 330 340 350 360 370 380 eg0040 FTEKMQSDMEKIQGKFIYLLGF :::::::::::::::::::::: gi|620 FTEKMQSDMEKIQGKFIYLLGF 370 380 >>gi|114606124|ref|XP_001140726.1| PREDICTED: ret finger (584 aa) initn: 2543 init1: 2543 opt: 2543 Z-score: 2709.4 bits: 510.7 E(): 2.8e-142 Smith-Waterman score: 2543; 99.196% identity (99.732% similar) in 373 aa overlap (1-373:5-377) 10 20 30 40 50 eg0040 GAQAQASARPLQAFGARARLGYGPGRRRPPSARCLSGTANRRERRRVGLSAELGAG :::::..:::::::::::::::::::::::::::::::::::::::::: :::::: gi|114 MTVDGAQAQGAARPLQAFGARARLGYGPGRRRPPSARCLSGTANRRERRRVGLRAELGAG 10 20 30 40 50 60 60 70 80 90 100 110 eg0040 AHARAPPQAGAMASGSVAECLQQETTCPVCLQYFAEPMMLDCGHNICCACLARCWGTAET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AHARAPPQAGAMASGSVAECLQQETTCPVCLQYFAEPMMLDCGHNICCACLARCWGTAET 70 80 90 100 110 120 120 130 140 150 160 170 eg0040 NVSCPQCRETFPQRHMRPNRHLANVTQLVKQLRTERPSGPGGEMGVCEKHREPLKLYCEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NVSCPQCRETFPQRHMRPNRHLANVTQLVKQLRTERPSGPGGEMGVCEKHREPLKLYCEE 130 140 150 160 170 180 180 190 200 210 220 230 eg0040 DQMPICVVCDRSREHRGHSVLPLEEAVEGFKEQIQNQLDHLKRVKDLKKRRRAQGEQARA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DQMPICVVCDRSREHRGHSVLPLEEAVEGFKEQIQNQLDHLKRVKDLKKRRRAQGEQARA 190 200 210 220 230 240 240 250 260 270 280 290 eg0040 ELLSLTQMEREKIVWEFEQLYHSLKEHEYRLLARLEELDLAIYNSINGAITQFSCNISHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ELLSLTQMEREKIVWEFEQLYHSLKEHEYRLLARLEELDLAIYNSINGAITQFSCNISHL 250 260 270 280 290 300 300 310 320 330 340 350 eg0040 SSLIAQLEEKQQQPTRELLQDIGDTLSRAERIRIPEPWITPPDLQEKIHIFAQKCLFLTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SSLIAQLEEKQQQPTRELLQDIGDTLSRAERIRIPEPWITPPDLQEKIHIFAQKCLFLTE 310 320 330 340 350 360 360 370 380 eg0040 SLKQFTEKMQSDMEKIQGKFIYLLGF ::::::::::::::::: gi|114 SLKQFTEKMQSDMEKIQELREAQLYSVDVTLDPDTAYPSLILSDNLRQVRYSYLQQDLPD 370 380 390 400 410 420 >>gi|109070090|ref|XP_001094465.1| PREDICTED: ret finger (720 aa) initn: 2338 init1: 2338 opt: 2341 Z-score: 2493.3 bits: 471.0 E(): 3.1e-130 Smith-Waterman score: 2343; 91.384% identity (92.950% similar) in 383 aa overlap (1-373:131-513) 10 20 eg0040 GAQAQASARPLQAFGARARLGYGPG----- :. : :. : : . : . ::: gi|109 PGPEATKSCHTLEARAKPRPPSRLFRSRRGGVYAAAGIRSDAATLSCALCAPGPGILTLG 110 120 130 140 150 160 30 40 50 60 70 80 eg0040 -----RRRPPSARCLSGTANRRERRRVGLSAELGAGAHARAPPQAGAMASGSVAECLQQE ..:::::::: :::: :::::::: :::::::::: :::: :::::::::::::: gi|109 YPFLPQHRPPSARCLPGTANGRERRRVGLRAELGAGAHAREPPQARAMASGSVAECLQQE 170 180 190 200 210 220 90 100 110 120 130 140 eg0040 TTCPVCLQYFAEPMMLDCGHNICCACLARCWGTAETNVSCPQCRETFPQRHMRPNRHLAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TTCPVCLQYFAEPMMLDCGHNICCACLARCWGTAETNVSCPQCRETFPQRHMRPNRHLAN 230 240 250 260 270 280 150 160 170 180 190 200 eg0040 VTQLVKQLRTERPSGPGGEMGVCEKHREPLKLYCEEDQMPICVVCDRSREHRGHSVLPLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VTQLVKQLRTERPSGPGGEMGVCEKHREPLKLYCEEDQMPICVVCDRSREHRGHSVLPLE 290 300 310 320 330 340 210 220 230 240 250 260 eg0040 EAVEGFKEQIQNQLDHLKRVKDLKKRRRAQGEQARAELLSLTQMEREKIVWEFEQLYHSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 EAVEGFKEQIQNQLDHLKRVKDLKKRRRAQGEQARAELLSLTQMEREKIVWEFEQLYHSL 350 360 370 380 390 400 270 280 290 300 310 320 eg0040 KEHEYRLLARLEELDLAIYNSINGAITQFSCNISHLSSLIAQLEEKQQQPTRELLQDIGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KEHEYRLLARLEELDLAIYNSINGAITQFSCNISHLSSLIAQLEEKQQQPTRELLQDIGD 410 420 430 440 450 460 330 340 350 360 370 380 eg0040 TLSRAERIRIPEPWITPPDLQEKIHIFAQKCLFLTESLKQFTEKMQSDMEKIQGKFIYLL ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TLSRAERIRIPEPWITPPDLQEKIHIFAQKCLFLTESLKQFTEKMQSDMEKIQELREAQL 470 480 490 500 510 520 eg0040 GF gi|109 YSVDVTLDPDTAYPSLILSDNLRQVRYSYLQQDLPDNPERFNLFPCVLGSPCFIAGRHYW 530 540 550 560 570 580 >>gi|47122750|gb|AAH69924.1| Tripartite motif-containing (604 aa) initn: 2120 init1: 2087 opt: 2136 Z-score: 2276.1 bits: 430.5 E(): 3.9e-118 Smith-Waterman score: 2136; 86.290% identity (90.591% similar) in 372 aa overlap (10-373:29-397) 10 20 30 eg0040 GAQAQASARPLQAFGARARLGYGPGRRRPPSARCL------ : .: : . : : :: : : : . gi|471 TLPGEPARGARFPTPLGSALSRAPGPRPPPRAVGEEQLCGDGSGRPRAPRASAIPAPEAP 10 20 30 40 50 60 40 50 60 70 80 90 eg0040 --SGTANRRERRRVGLSAELGAGAHARAPPQAGAMASGSVAECLQQETTCPVCLQYFAEP ::. .: :: .. :. . :. : : : ::::::::::::::::::::::::.:: gi|471 PRSGAEKRSERAELRQSS--APGSCPAAQP-ARAMASGSVAECLQQETTCPVCLQYFVEP 70 80 90 100 110 100 110 120 130 140 150 eg0040 MMLDCGHNICCACLARCWGTAETNVSCPQCRETFPQRHMRPNRHLANVTQLVKQLRTERP :::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::: gi|471 MMLDCGHNICCACLARCWGAAETNVSCPQCRETFPQRHMRPNRHLANVTQLVKQLRTERP 120 130 140 150 160 170 160 170 180 190 200 210 eg0040 SGPGGEMGVCEKHREPLKLYCEEDQMPICVVCDRSREHRGHSVLPLEEAVEGFKEQIQNQ ::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::. gi|471 SGPGGEMGVCEKHREPLKLYCEQDQMPICVVCDRSREHRGHSVLPLEEAVEGFKEQIQNR 180 190 200 210 220 230 220 230 240 250 260 270 eg0040 LDHLKRVKDLKKRRRAQGEQARAELLSLTQMEREKIVWEFEQLYHSLKEHEYRLLARLEE ::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|471 LDHLRRVKDLKKRRRAQGEQARAELLSLTQMEREKIVWEFEQLYHSLKEHEYRLLARLEE 240 250 260 270 280 290 280 290 300 310 320 330 eg0040 LDLAIYNSINGAITQFSCNISHLSSLIAQLEEKQQQPTRELLQDIGDTLSRAERIRIPEP ::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: gi|471 LDLAIYNSINGAITQFSCNISHLSGLIAQLEEKQQQPTRELLQDIGDTLSRAERIRIPEP 300 310 320 330 340 350 340 350 360 370 380 eg0040 WITPPDLQEKIHIFAQKCLFLTESLKQFTEKMQSDMEKIQGKFIYLLGF :::::::::::::::::::::::::::::::::::::::: gi|471 WITPPDLQEKIHIFAQKCLFLTESLKQFTEKMQSDMEKIQELREAQLYSVDVTLDPDTAY 360 370 380 390 400 410 gi|471 PSLILSDNLRQVRYSYLQQDLPDNPERFNLFPCVLGSPCFMAGRHYWEVEVGDKAKWTIG 420 430 440 450 460 470 >>gi|340026|gb|AAA36786.1| tyrosine kinase (805 aa) initn: 2123 init1: 2123 opt: 2123 Z-score: 2260.7 bits: 428.1 E(): 2.8e-117 Smith-Waterman score: 2123; 99.677% identity (99.677% similar) in 310 aa overlap (64-373:1-310) 40 50 60 70 80 90 eg0040 CLSGTANRRERRRVGLSAELGAGAHARAPPQAGAMASGSVAECLQQETTCPVCLQYFAEP :::::::::::::::::::::::::::::: gi|340 QAGAMASGSVAECLQQETTCPVCLQYFAEP 10 20 30 100 110 120 130 140 150 eg0040 MMLDCGHNICCACLARCWGTAETNVSCPQCRETFPQRHMRPNRHLANVTQLVKQLRTERP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|340 MMLDCGHNICCACLARCWGTAETNVSCPQCRETFPQRHMRPNRHLANVTQLVKQLRTERP 40 50 60 70 80 90 160 170 180 190 200 210 eg0040 SGPGGEMGVCEKHREPLKLYCEEDQMPICVVCDRSREHRGHSVLPLEEAVEGFKEQIQNQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|340 SGPGGEMGVCEKHREPLKLYCEEDQMPICVVCDRSREHRGHSVLPLEEAVEGFKEQIQNQ 100 110 120 130 140 150 220 230 240 250 260 270 eg0040 LDHLKRVKDLKKRRRAQGEQARAELLSLTQMEREKIVWEFEQLYHSLKEHEYRLLARLEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|340 LDHLKRVKDLKKRRRAQGEQARAELLSLTQMEREKIVWEFEQLYHSLKEHEYRLLARLEE 160 170 180 190 200 210 280 290 300 310 320 330 eg0040 LDLAIYNSINGAITQFSCNISHLSSLIAQLEEKQQQPTRELLQDIGDTLSRAERIRIPEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|340 LDLAIYNSINGAITQFSCNISHLSSLIAQLEEKQQQPTRELLQDIGDTLSRAERIRIPEP 220 230 240 250 260 270 340 350 360 370 380 eg0040 WITPPDLQEKIHIFAQKCLFLTESLKQFTEKMQSDMEKIQGKFIYLLGF ::::::::::::::: :::::::::::::::::::::::: gi|340 WITPPDLQEKIHIFAPKCLFLTESLKQFTEKMQSDMEKIQELREAQLYSGGSIVGGHEPG 280 290 300 310 320 330 gi|340 EPRGIKAGYGTCNCFPEEEKCFCEPEDIQDPLCDELCRTVIAAAVLFSFVVSVLLSAFCI 340 350 360 370 380 390 >>gi|12275876|gb|AAG50173.1|AF230394_1 tripartite motif (358 aa) initn: 2106 init1: 2106 opt: 2106 Z-score: 2246.9 bits: 424.4 E(): 1.7e-116 Smith-Waterman score: 2106; 100.000% identity (100.000% similar) in 306 aa overlap (68-373:1-306) 40 50 60 70 80 90 eg0040 TANRRERRRVGLSAELGAGAHARAPPQAGAMASGSVAECLQQETTCPVCLQYFAEPMMLD :::::::::::::::::::::::::::::: gi|122 MASGSVAECLQQETTCPVCLQYFAEPMMLD 10 20 30 100 110 120 130 140 150 eg0040 CGHNICCACLARCWGTAETNVSCPQCRETFPQRHMRPNRHLANVTQLVKQLRTERPSGPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 CGHNICCACLARCWGTAETNVSCPQCRETFPQRHMRPNRHLANVTQLVKQLRTERPSGPG 40 50 60 70 80 90 160 170 180 190 200 210 eg0040 GEMGVCEKHREPLKLYCEEDQMPICVVCDRSREHRGHSVLPLEEAVEGFKEQIQNQLDHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 GEMGVCEKHREPLKLYCEEDQMPICVVCDRSREHRGHSVLPLEEAVEGFKEQIQNQLDHL 100 110 120 130 140 150 220 230 240 250 260 270 eg0040 KRVKDLKKRRRAQGEQARAELLSLTQMEREKIVWEFEQLYHSLKEHEYRLLARLEELDLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 KRVKDLKKRRRAQGEQARAELLSLTQMEREKIVWEFEQLYHSLKEHEYRLLARLEELDLA 160 170 180 190 200 210 280 290 300 310 320 330 eg0040 IYNSINGAITQFSCNISHLSSLIAQLEEKQQQPTRELLQDIGDTLSRAERIRIPEPWITP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 IYNSINGAITQFSCNISHLSSLIAQLEEKQQQPTRELLQDIGDTLSRAERIRIPEPWITP 220 230 240 250 260 270 340 350 360 370 380 eg0040 PDLQEKIHIFAQKCLFLTESLKQFTEKMQSDMEKIQGKFIYLLGF :::::::::::::::::::::::::::::::::::: gi|122 PDLQEKIHIFAQKCLFLTESLKQFTEKMQSDMEKIQELREAQLYSVDVTLDPDTAYPSLI 280 290 300 310 320 330 gi|122 LSDNLRQVRYSYLQQDLPDNPERSPSTT 340 350 >>gi|44890750|gb|AAH66924.1| Tripartite motif-containing (513 aa) initn: 2106 init1: 2106 opt: 2106 Z-score: 2245.0 bits: 424.6 E(): 2.1e-116 Smith-Waterman score: 2106; 100.000% identity (100.000% similar) in 306 aa overlap (68-373:1-306) 40 50 60 70 80 90 eg0040 TANRRERRRVGLSAELGAGAHARAPPQAGAMASGSVAECLQQETTCPVCLQYFAEPMMLD :::::::::::::::::::::::::::::: gi|448 MASGSVAECLQQETTCPVCLQYFAEPMMLD 10 20 30 100 110 120 130 140 150 eg0040 CGHNICCACLARCWGTAETNVSCPQCRETFPQRHMRPNRHLANVTQLVKQLRTERPSGPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|448 CGHNICCACLARCWGTAETNVSCPQCRETFPQRHMRPNRHLANVTQLVKQLRTERPSGPG 40 50 60 70 80 90 160 170 180 190 200 210 eg0040 GEMGVCEKHREPLKLYCEEDQMPICVVCDRSREHRGHSVLPLEEAVEGFKEQIQNQLDHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|448 GEMGVCEKHREPLKLYCEEDQMPICVVCDRSREHRGHSVLPLEEAVEGFKEQIQNQLDHL 100 110 120 130 140 150 220 230 240 250 260 270 eg0040 KRVKDLKKRRRAQGEQARAELLSLTQMEREKIVWEFEQLYHSLKEHEYRLLARLEELDLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|448 KRVKDLKKRRRAQGEQARAELLSLTQMEREKIVWEFEQLYHSLKEHEYRLLARLEELDLA 160 170 180 190 200 210 280 290 300 310 320 330 eg0040 IYNSINGAITQFSCNISHLSSLIAQLEEKQQQPTRELLQDIGDTLSRAERIRIPEPWITP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|448 IYNSINGAITQFSCNISHLSSLIAQLEEKQQQPTRELLQDIGDTLSRAERIRIPEPWITP 220 230 240 250 260 270 340 350 360 370 380 eg0040 PDLQEKIHIFAQKCLFLTESLKQFTEKMQSDMEKIQGKFIYLLGF :::::::::::::::::::::::::::::::::::: gi|448 PDLQEKIHIFAQKCLFLTESLKQFTEKMQSDMEKIQELREAQLYSVDVTLDPDTAYPSLI 280 290 300 310 320 330 gi|448 LSDNLRQVRYSYLQQDLPDNPERFNLFPCVLGSPCFIAGRHYWEVEVGDKAKWTIGVCED 340 350 360 370 380 390 >>gi|132517|sp|P14373|TRI27_HUMAN Zinc finger protein RF (513 aa) initn: 2106 init1: 2106 opt: 2106 Z-score: 2245.0 bits: 424.6 E(): 2.1e-116 Smith-Waterman score: 2106; 100.000% identity (100.000% similar) in 306 aa overlap (68-373:1-306) 40 50 60 70 80 90 eg0040 TANRRERRRVGLSAELGAGAHARAPPQAGAMASGSVAECLQQETTCPVCLQYFAEPMMLD :::::::::::::::::::::::::::::: gi|132 MASGSVAECLQQETTCPVCLQYFAEPMMLD 10 20 30 100 110 120 130 140 150 eg0040 CGHNICCACLARCWGTAETNVSCPQCRETFPQRHMRPNRHLANVTQLVKQLRTERPSGPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|132 CGHNICCACLARCWGTAETNVSCPQCRETFPQRHMRPNRHLANVTQLVKQLRTERPSGPG 40 50 60 70 80 90 160 170 180 190 200 210 eg0040 GEMGVCEKHREPLKLYCEEDQMPICVVCDRSREHRGHSVLPLEEAVEGFKEQIQNQLDHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|132 GEMGVCEKHREPLKLYCEEDQMPICVVCDRSREHRGHSVLPLEEAVEGFKEQIQNQLDHL 100 110 120 130 140 150 220 230 240 250 260 270 eg0040 KRVKDLKKRRRAQGEQARAELLSLTQMEREKIVWEFEQLYHSLKEHEYRLLARLEELDLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|132 KRVKDLKKRRRAQGEQARAELLSLTQMEREKIVWEFEQLYHSLKEHEYRLLARLEELDLA 160 170 180 190 200 210 280 290 300 310 320 330 eg0040 IYNSINGAITQFSCNISHLSSLIAQLEEKQQQPTRELLQDIGDTLSRAERIRIPEPWITP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|132 IYNSINGAITQFSCNISHLSSLIAQLEEKQQQPTRELLQDIGDTLSRAERIRIPEPWITP 220 230 240 250 260 270 340 350 360 370 380 eg0040 PDLQEKIHIFAQKCLFLTESLKQFTEKMQSDMEKIQGKFIYLLGF :::::::::::::::::::::::::::::::::::: gi|132 PDLQEKIHIFAQKCLFLTESLKQFTEKMQSDMEKIQELREAQLYSVDVTLDPDTAYPSLI 280 290 300 310 320 330 gi|132 LSDNLRQVRYSYLQQDLPDNPERFNLFPCVLGSPCFIAGRHYWEVEVGDKAKWTIGVCED 340 350 360 370 380 390 >>gi|30583897|gb|AAP36197.1| Homo sapiens ret finger pro (514 aa) initn: 2106 init1: 2106 opt: 2106 Z-score: 2245.0 bits: 424.6 E(): 2.1e-116 Smith-Waterman score: 2106; 100.000% identity (100.000% similar) in 306 aa overlap (68-373:1-306) 40 50 60 70 80 90 eg0040 TANRRERRRVGLSAELGAGAHARAPPQAGAMASGSVAECLQQETTCPVCLQYFAEPMMLD :::::::::::::::::::::::::::::: gi|305 MASGSVAECLQQETTCPVCLQYFAEPMMLD 10 20 30 100 110 120 130 140 150 eg0040 CGHNICCACLARCWGTAETNVSCPQCRETFPQRHMRPNRHLANVTQLVKQLRTERPSGPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 CGHNICCACLARCWGTAETNVSCPQCRETFPQRHMRPNRHLANVTQLVKQLRTERPSGPG 40 50 60 70 80 90 160 170 180 190 200 210 eg0040 GEMGVCEKHREPLKLYCEEDQMPICVVCDRSREHRGHSVLPLEEAVEGFKEQIQNQLDHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 GEMGVCEKHREPLKLYCEEDQMPICVVCDRSREHRGHSVLPLEEAVEGFKEQIQNQLDHL 100 110 120 130 140 150 220 230 240 250 260 270 eg0040 KRVKDLKKRRRAQGEQARAELLSLTQMEREKIVWEFEQLYHSLKEHEYRLLARLEELDLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 KRVKDLKKRRRAQGEQARAELLSLTQMEREKIVWEFEQLYHSLKEHEYRLLARLEELDLA 160 170 180 190 200 210 280 290 300 310 320 330 eg0040 IYNSINGAITQFSCNISHLSSLIAQLEEKQQQPTRELLQDIGDTLSRAERIRIPEPWITP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 IYNSINGAITQFSCNISHLSSLIAQLEEKQQQPTRELLQDIGDTLSRAERIRIPEPWITP 220 230 240 250 260 270 340 350 360 370 380 eg0040 PDLQEKIHIFAQKCLFLTESLKQFTEKMQSDMEKIQGKFIYLLGF :::::::::::::::::::::::::::::::::::: gi|305 PDLQEKIHIFAQKCLFLTESLKQFTEKMQSDMEKIQELREAQLYSVDVTLDPDTAYPSLI 280 290 300 310 320 330 gi|305 LSDNLRQVRYSYLQQDLPDNPERFNLFPCVLGSPCFIAGRHYWEVEVGDKAKWTIGVCED 340 350 360 370 380 390 >>gi|123980158|gb|ABM81908.1| ret finger protein [synthe (513 aa) initn: 2096 init1: 2096 opt: 2096 Z-score: 2234.3 bits: 422.6 E(): 8.2e-116 Smith-Waterman score: 2096; 99.673% identity (99.673% similar) in 306 aa overlap (68-373:1-306) 40 50 60 70 80 90 eg0040 TANRRERRRVGLSAELGAGAHARAPPQAGAMASGSVAECLQQETTCPVCLQYFAEPMMLD :::::::::::::::::::::::::::::: gi|123 MASGSVAECLQQETTCPVCLQYFAEPMMLD 10 20 30 100 110 120 130 140 150 eg0040 CGHNICCACLARCWGTAETNVSCPQCRETFPQRHMRPNRHLANVTQLVKQLRTERPSGPG ::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: gi|123 CGHNICCACLARCWGTAETNVSCPQCRETFPQRHMWPNRHLANVTQLVKQLRTERPSGPG 40 50 60 70 80 90 160 170 180 190 200 210 eg0040 GEMGVCEKHREPLKLYCEEDQMPICVVCDRSREHRGHSVLPLEEAVEGFKEQIQNQLDHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 GEMGVCEKHREPLKLYCEEDQMPICVVCDRSREHRGHSVLPLEEAVEGFKEQIQNQLDHL 100 110 120 130 140 150 220 230 240 250 260 270 eg0040 KRVKDLKKRRRAQGEQARAELLSLTQMEREKIVWEFEQLYHSLKEHEYRLLARLEELDLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 KRVKDLKKRRRAQGEQARAELLSLTQMEREKIVWEFEQLYHSLKEHEYRLLARLEELDLA 160 170 180 190 200 210 280 290 300 310 320 330 eg0040 IYNSINGAITQFSCNISHLSSLIAQLEEKQQQPTRELLQDIGDTLSRAERIRIPEPWITP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 IYNSINGAITQFSCNISHLSSLIAQLEEKQQQPTRELLQDIGDTLSRAERIRIPEPWITP 220 230 240 250 260 270 340 350 360 370 380 eg0040 PDLQEKIHIFAQKCLFLTESLKQFTEKMQSDMEKIQGKFIYLLGF :::::::::::::::::::::::::::::::::::: gi|123 PDLQEKIHIFAQKCLFLTESLKQFTEKMQSDMEKIQELREAQLYSVDVTLDPDTAYPSLI 280 290 300 310 320 330 gi|123 LSDNLRQVRYSYLQQDLPDNPERFNLFPCVLGSPCFIAGRHYWEVEVGDKAKWTIGVCED 340 350 360 370 380 390 382 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Fri Aug 8 13:46:12 2008 done: Fri Aug 8 13:48:43 2008 Total Scan time: 802.370 Total Display time: 0.100 Function used was FASTA [version 34.26.5 April 26, 2007]