hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-13484487/chunk_1/iprscan-20080808-13484487.nocrc
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Query sequence: eg00407
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00643.14.ls B-box zinc finger                               75.6    1.4e-19   1
PF00643.14.fs B-box zinc finger                               73.8      5e-19   1
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           44.4    3.8e-15   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           46.2      1e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00097.15.fs   1/1      83   123 ..     1    50 []    44.4  3.8e-15
PF00097.15.ls   1/1      83   123 ..     1    50 []    46.2    1e-10
PF00643.14.fs   1/1     158   199 ..     1    50 []    73.8    5e-19
PF00643.14.ls   1/1     158   199 ..     1    50 []    75.6  1.4e-19

Alignments of top-scoring domains:
PF00097.15.fs: domain 1 of 1, from 83 to 123: score 44.4, E = 3.8e-15
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlss.sgntt
                      C++Cl++++ep+     +l CgH       C++Cl r++ + ++n++
     eg00407    83    CPVCLQYFAEPM-----MLDCGHN-----ICCACLARCWGTaETNVS 119  

                   CplC<-*
                   Cp+C   
     eg00407   120 CPQC    123  

PF00097.15.ls: domain 1 of 1, from 83 to 123: score 46.2, E = 1e-10
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlss.sgntt
                      C++Cl++++ep+     +l CgH       C++Cl r++ + ++n++
     eg00407    83    CPVCLQYFAEPM-----MLDCGHN-----ICCACLARCWGTaETNVS 119  

                   CplC<-*
                   Cp+C   
     eg00407   120 CPQC    123  

PF00643.14.fs: domain 1 of 1, from 158 to 199: score 73.8, E = 5e-19
                   *->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv
                      +++ vC+ H+  e+l+l+Ce+D++++CvvC++s+eH      rgH v
     eg00407   158    GEMGVCEKHR--EPLKLYCEEDQMPICVVCDRSREH------RGHSV 196  

                   vpl<-*
                    pl   
     eg00407   197 LPL    199  

PF00643.14.ls: domain 1 of 1, from 158 to 199: score 75.6, E = 1.4e-19
                   *->ekervCpeHgdneklslFCedDgqlLCvvCrlsgeHqanklfrgHtv
                      +++ vC+ H+  e+l+l+Ce+D++++CvvC++s+eH      rgH v
     eg00407   158    GEMGVCEKHR--EPLKLYCEEDQMPICVVCDRSREH------RGHSV 196  

                   vpl<-*
                    pl   
     eg00407   197 LPL    199  

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