# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Oeg00416.fasta.nr -Q eg00416.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 eg00416, 489 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6822119 sequences Expectation_n fit: rho(ln(x))= 5.2362+/-0.000181; mu= 10.9710+/- 0.010 mean_var=69.6922+/-14.096, 0's: 26 Z-trim: 46 B-trim: 2874 in 1/65 Lambda= 0.153632 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62089358|dbj|BAD93123.1| MSH5 protein variant [ ( 489) 3205 719.5 4.3e-205 gi|114606473|ref|XP_001158071.1| PREDICTED: mutS h ( 478) 3098 695.7 5.9e-198 gi|123271497|emb|CAI17726.2| mutS homolog 5 (E. co ( 821) 3027 680.1 4.9e-193 gi|168985914|emb|CAQ07247.1| mutS homolog 5 (E. co ( 466) 3022 678.9 6.7e-193 gi|26996739|gb|AAH41031.1| MSH5 protein [Homo sapi ( 822) 3015 677.5 3.1e-192 gi|123295735|emb|CAM26106.1| mutS homolog 5 (E. co ( 467) 3010 676.2 4.3e-192 gi|114606469|ref|XP_001157913.1| PREDICTED: mutS h ( 822) 3006 675.5 1.2e-191 gi|123271499|emb|CAM24984.1| mutS homolog 5 (E. co ( 508) 2721 612.2 8.8e-173 gi|3108220|gb|AAC62533.1| MutS homolog 5 [Homo sap ( 834) 2641 594.6 2.8e-167 gi|3914060|sp|O43196.1|MSH5_HUMAN MutS protein hom ( 834) 2641 594.6 2.8e-167 gi|60459550|gb|AAX20111.1| mutS homolog 5 (E. coli ( 851) 2641 594.6 2.9e-167 gi|123295736|emb|CAM26107.1| mutS homolog 5 (E. co ( 496) 2636 593.3 4e-167 gi|114606471|ref|XP_001158290.1| PREDICTED: mutS h ( 834) 2632 592.6 1.1e-166 gi|12655021|gb|AAH01358.1| MutS homolog 5 (E. coli ( 835) 2629 591.9 1.8e-166 gi|30584843|gb|AAP36674.1| Homo sapiens mutS homol ( 836) 2629 591.9 1.8e-166 gi|5725250|emb|CAB52406.1| G7 protein [Homo sapien ( 851) 2628 591.7 2.1e-166 gi|123295734|emb|CAM26105.1| mutS homolog 5 (E. co ( 497) 2624 590.7 2.6e-166 gi|114606467|ref|XP_518358.2| PREDICTED: mutS homo ( 835) 2620 589.9 7.2e-166 gi|109070447|ref|XP_001105745.1| PREDICTED: simila ( 834) 2610 587.7 3.3e-165 gi|126540442|emb|CAM45783.1| mutS homolog 5 (E. co ( 401) 2601 585.5 7.4e-165 gi|73972286|ref|XP_532080.2| PREDICTED: similar to ( 826) 2562 577.1 5.3e-162 gi|194223354|ref|XP_001491489.2| PREDICTED: mutS h ( 831) 2561 576.9 6.2e-162 gi|126540437|emb|CAM45778.1| mutS homolog 5 (E. co ( 727) 2521 568.0 2.6e-159 gi|119623913|gb|EAX03508.1| mutS homolog 5 (E. col ( 758) 2521 568.0 2.7e-159 gi|119623911|gb|EAX03506.1| mutS homolog 5 (E. col ( 775) 2521 568.0 2.7e-159 gi|126540439|emb|CAM45780.1| mutS homolog 5 (E. co ( 728) 2509 565.3 1.6e-158 gi|126540438|emb|CAM45779.1| mutS homolog 5 (E. co ( 745) 2509 565.3 1.7e-158 gi|119623922|gb|EAX03517.1| mutS homolog 5 (E. col ( 823) 2505 564.4 3.3e-158 gi|16118498|gb|AAL14454.1|AF397035_8 DNA mismatch ( 833) 2489 560.9 3.9e-157 gi|81906991|sp|Q9QUM7|MSH5_MOUSE MutS protein homo ( 833) 2489 560.9 3.9e-157 gi|187954721|gb|AAI41114.1| MutS homolog 5 (E. col ( 833) 2483 559.6 9.9e-157 gi|81891999|sp|Q6MG62|MSH5_RAT MutS protein homolo ( 831) 2472 557.1 5.3e-156 gi|54035356|gb|AAH83904.1| MutS homolog 5 (E. coli ( 830) 2455 553.4 7.3e-155 gi|73972278|ref|XP_859877.1| PREDICTED: similar to ( 468) 2272 512.6 7.4e-143 gi|189529095|ref|XP_698552.3| PREDICTED: similar t ( 814) 1693 384.5 5e-104 gi|6102906|emb|CAB59262.1| hypothetical protein [H ( 263) 1626 369.3 5.9e-100 gi|5814102|gb|AAD52100.1| MSH5 [Mus musculus] ( 258) 1577 358.4 1.1e-96 gi|73972284|ref|XP_859983.1| PREDICTED: similar to ( 398) 1499 341.3 2.5e-91 gi|123271498|emb|CAM24983.1| mutS homolog 5 (E. co ( 333) 972 224.4 3.1e-56 gi|123295733|emb|CAM26104.1| mutS homolog 5 (E. co ( 158) 967 223.1 3.7e-56 gi|149434675|ref|XP_001516940.1| PREDICTED: simila ( 319) 940 217.3 4.1e-54 gi|47225430|emb|CAG11913.1| unnamed protein produc ( 658) 903 209.3 2.2e-51 gi|156227958|gb|EDO48759.1| predicted protein [Nem ( 889) 903 209.4 2.7e-51 gi|110757201|ref|XP_001122595.1| PREDICTED: simila (1879) 891 206.9 3.2e-50 gi|190583338|gb|EDV23409.1| hypothetical protein T ( 706) 846 196.7 1.4e-47 gi|91090516|ref|XP_969800.1| PREDICTED: similar to ( 676) 805 187.6 7.6e-45 gi|158599371|gb|EDP37005.1| MutS domain V family p ( 510) 800 186.4 1.3e-44 gi|3831701|gb|AAC70065.1| MutS homolog [Caenorhabd ( 933) 803 187.2 1.3e-44 gi|52783755|sp|Q19272|MSH5_CAEEL MutS protein homo (1369) 803 187.4 1.8e-44 gi|48475216|gb|AAT44285.1| unknown protein [Oryza ( 809) 748 175.0 5.6e-41 >>gi|62089358|dbj|BAD93123.1| MSH5 protein variant [Homo (489 aa) initn: 3205 init1: 3205 opt: 3205 Z-score: 3837.2 bits: 719.5 E(): 4.3e-205 Smith-Waterman score: 3205; 100.000% identity (100.000% similar) in 489 aa overlap (1-489:1-489) 10 20 30 40 50 60 eg0041 VCPYHHLNPSWMWPVLLFVFLSQTVYSALGLRDACRSLPQSIQLFRDIAQEFSDDLHHIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 VCPYHHLNPSWMWPVLLFVFLSQTVYSALGLRDACRSLPQSIQLFRDIAQEFSDDLHHIA 10 20 30 40 50 60 70 80 90 100 110 120 eg0041 SLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKELENLDSRIPSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKELENLDSRIPSC 70 80 90 100 110 120 130 140 150 160 170 180 eg0041 SVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSARTKELDALLGDLHC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSARTKELDALLGDLHC 130 140 150 160 170 180 190 200 210 220 230 240 eg0041 EIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYSRPRYSPQVLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 EIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYSRPRYSPQVLG 190 200 210 220 230 240 250 260 270 280 290 300 eg0041 VRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 VRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVG 250 260 270 280 290 300 310 320 330 340 350 360 eg0041 SFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGK 310 320 330 340 350 360 370 380 390 400 410 420 eg0041 GTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLVQYLTMETCEDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLVQYLTMETCEDG 370 380 390 400 410 420 430 440 450 460 470 480 eg0041 NDLVFFYQVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 NDLVFFYQVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQE 430 440 450 460 470 480 eg0041 VLPAATSIL ::::::::: gi|620 VLPAATSIL >>gi|114606473|ref|XP_001158071.1| PREDICTED: mutS homol (478 aa) initn: 3098 init1: 3098 opt: 3098 Z-score: 3709.1 bits: 695.7 E(): 5.9e-198 Smith-Waterman score: 3098; 99.582% identity (100.000% similar) in 478 aa overlap (12-489:1-478) 10 20 30 40 50 60 eg0041 VCPYHHLNPSWMWPVLLFVFLSQTVYSALGLRDACRSLPQSIQLFRDIAQEFSDDLHHIA :::::::::::::::.::::::::::::::::::::::::::::::::: gi|114 MWPVLLFVFLSQTVYGALGLRDACRSLPQSIQLFRDIAQEFSDDLHHIA 10 20 30 40 70 80 90 100 110 120 eg0041 SLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKELENLDSRIPSC :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: gi|114 SLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPNFLTEVARKELENLDSRIPSC 50 60 70 80 90 100 130 140 150 160 170 180 eg0041 SVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSARTKELDALLGDLHC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSARTKELDALLGDLHC 110 120 130 140 150 160 190 200 210 220 230 240 eg0041 EIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYSRPRYSPQVLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 EIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYSRPRYSPQVLG 170 180 190 200 210 220 250 260 270 280 290 300 eg0041 VRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVG 230 240 250 260 270 280 310 320 330 340 350 360 eg0041 SFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGK 290 300 310 320 330 340 370 380 390 400 410 420 eg0041 GTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLVQYLTMETCEDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLVQYLTMETCEDG 350 360 370 380 390 400 430 440 450 460 470 480 eg0041 NDLVFFYQVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NDLVFFYQVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQE 410 420 430 440 450 460 eg0041 VLPAATSIL ::::::::: gi|114 VLPAATSIL 470 >>gi|123271497|emb|CAI17726.2| mutS homolog 5 (E. coli) (821 aa) initn: 3027 init1: 3027 opt: 3027 Z-score: 3620.7 bits: 680.1 E(): 4.9e-193 Smith-Waterman score: 3027; 99.574% identity (99.787% similar) in 469 aa overlap (21-489:353-821) 10 20 30 40 50 eg0041 VCPYHHLNPSWMWPVLLFVFLSQTVYSALGLRDACRSLPQSIQLFRDIAQ : .::::::::::::::::::::::::::: gi|123 LHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLFRDIAQ 330 340 350 360 370 380 60 70 80 90 100 110 eg0041 EFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 EFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKEL 390 400 410 420 430 440 120 130 140 150 160 170 eg0041 ENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSARTKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 ENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSARTKE 450 460 470 480 490 500 180 190 200 210 220 230 eg0041 LDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 LDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYS 510 520 530 540 550 560 240 250 260 270 280 290 eg0041 RPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 RPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQV 570 580 590 600 610 620 300 310 320 330 340 350 eg0041 GLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 GLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQ 630 640 650 660 670 680 360 370 380 390 400 410 eg0041 SLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 SLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLVQ 690 700 710 720 730 740 420 430 440 450 460 470 eg0041 YLTMETCEDGNDLVFFYQVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 YLTMETCEDGNDLVFFYQVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPN 750 760 770 780 790 800 480 eg0041 LDLNVFMSQEVLPAATSIL ::::::::::::::::::: gi|123 LDLNVFMSQEVLPAATSIL 810 820 >>gi|168985914|emb|CAQ07247.1| mutS homolog 5 (E. coli) (466 aa) initn: 3022 init1: 3022 opt: 3022 Z-score: 3618.3 bits: 678.9 E(): 6.7e-193 Smith-Waterman score: 3022; 100.000% identity (100.000% similar) in 466 aa overlap (24-489:1-466) 10 20 30 40 50 60 eg0041 VCPYHHLNPSWMWPVLLFVFLSQTVYSALGLRDACRSLPQSIQLFRDIAQEFSDDLHHIA ::::::::::::::::::::::::::::::::::::: gi|168 TVYSALGLRDACRSLPQSIQLFRDIAQEFSDDLHHIA 10 20 30 70 80 90 100 110 120 eg0041 SLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKELENLDSRIPSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 SLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKELENLDSRIPSC 40 50 60 70 80 90 130 140 150 160 170 180 eg0041 SVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSARTKELDALLGDLHC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 SVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSARTKELDALLGDLHC 100 110 120 130 140 150 190 200 210 220 230 240 eg0041 EIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYSRPRYSPQVLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 EIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYSRPRYSPQVLG 160 170 180 190 200 210 250 260 270 280 290 300 eg0041 VRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 VRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVG 220 230 240 250 260 270 310 320 330 340 350 360 eg0041 SFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 SFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGK 280 290 300 310 320 330 370 380 390 400 410 420 eg0041 GTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLVQYLTMETCEDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 GTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLVQYLTMETCEDG 340 350 360 370 380 390 430 440 450 460 470 480 eg0041 NDLVFFYQVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 NDLVFFYQVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQE 400 410 420 430 440 450 eg0041 VLPAATSIL ::::::::: gi|168 VLPAATSIL 460 >>gi|26996739|gb|AAH41031.1| MSH5 protein [Homo sapiens] (822 aa) initn: 2050 init1: 2050 opt: 3015 Z-score: 3606.3 bits: 677.5 E(): 3.1e-192 Smith-Waterman score: 3015; 99.362% identity (99.574% similar) in 470 aa overlap (21-489:353-822) 10 20 30 40 50 eg0041 VCPYHHLNPSWMWPVLLFVFLSQTVYSALGLRDACRSLPQSIQLFRDIAQ : .::::::::::::::::::::::::::: gi|269 LHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLFRDIAQ 330 340 350 360 370 380 60 70 80 90 100 110 eg0041 EFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|269 EFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKEL 390 400 410 420 430 440 120 130 140 150 160 170 eg0041 ENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSARTKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|269 ENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSARTKE 450 460 470 480 490 500 180 190 200 210 220 230 eg0041 LDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|269 LDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYS 510 520 530 540 550 560 240 250 260 270 280 290 eg0041 RPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|269 RPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQV 570 580 590 600 610 620 300 310 320 330 340 eg0041 GLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQ-VAKAVNNATA ::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::: gi|269 GLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQQVAKAVNNATA 630 640 650 660 670 680 350 360 370 380 390 400 eg0041 QSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|269 QSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLV 690 700 710 720 730 740 410 420 430 440 450 460 eg0041 QYLTMETCEDGNDLVFFYQVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|269 QYLTMETCEDGNDLVFFYQVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDP 750 760 770 780 790 800 470 480 eg0041 NLDLNVFMSQEVLPAATSIL :::::::::::::::::::: gi|269 NLDLNVFMSQEVLPAATSIL 810 820 >>gi|123295735|emb|CAM26106.1| mutS homolog 5 (E. coli) (467 aa) initn: 2045 init1: 2045 opt: 3010 Z-score: 3603.9 bits: 676.2 E(): 4.3e-192 Smith-Waterman score: 3010; 99.786% identity (99.786% similar) in 467 aa overlap (24-489:1-467) 10 20 30 40 50 60 eg0041 VCPYHHLNPSWMWPVLLFVFLSQTVYSALGLRDACRSLPQSIQLFRDIAQEFSDDLHHIA ::::::::::::::::::::::::::::::::::::: gi|123 TVYSALGLRDACRSLPQSIQLFRDIAQEFSDDLHHIA 10 20 30 70 80 90 100 110 120 eg0041 SLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKELENLDSRIPSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 SLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKELENLDSRIPSC 40 50 60 70 80 90 130 140 150 160 170 180 eg0041 SVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSARTKELDALLGDLHC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 SVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSARTKELDALLGDLHC 100 110 120 130 140 150 190 200 210 220 230 240 eg0041 EIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYSRPRYSPQVLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 EIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYSRPRYSPQVLG 160 170 180 190 200 210 250 260 270 280 290 300 eg0041 VRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 VRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVG 220 230 240 250 260 270 310 320 330 340 350 eg0041 SFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQ-VAKAVNNATAQSLVLIDEFG ::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::: gi|123 SFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQQVAKAVNNATAQSLVLIDEFG 280 290 300 310 320 330 360 370 380 390 400 410 eg0041 KGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLVQYLTMETCED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 KGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLVQYLTMETCED 340 350 360 370 380 390 420 430 440 450 460 470 eg0041 GNDLVFFYQVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 GNDLVFFYQVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQ 400 410 420 430 440 450 480 eg0041 EVLPAATSIL :::::::::: gi|123 EVLPAATSIL 460 >>gi|114606469|ref|XP_001157913.1| PREDICTED: mutS homol (822 aa) initn: 2041 init1: 2041 opt: 3006 Z-score: 3595.5 bits: 675.5 E(): 1.2e-191 Smith-Waterman score: 3006; 98.936% identity (99.574% similar) in 470 aa overlap (21-489:353-822) 10 20 30 40 50 eg0041 VCPYHHLNPSWMWPVLLFVFLSQTVYSALGLRDACRSLPQSIQLFRDIAQ : .:::.::::::::::::::::::::::: gi|114 LHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYGALGLRDACRSLPQSIQLFRDIAQ 330 340 350 360 370 380 60 70 80 90 100 110 eg0041 EFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKEL :::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::: gi|114 EFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPNFLTEVARKEL 390 400 410 420 430 440 120 130 140 150 160 170 eg0041 ENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSARTKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSARTKE 450 460 470 480 490 500 180 190 200 210 220 230 eg0041 LDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYS 510 520 530 540 550 560 240 250 260 270 280 290 eg0041 RPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQV 570 580 590 600 610 620 300 310 320 330 340 eg0041 GLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQ-VAKAVNNATA ::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::: gi|114 GLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQQVAKAVNNATA 630 640 650 660 670 680 350 360 370 380 390 400 eg0041 QSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 QSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLV 690 700 710 720 730 740 410 420 430 440 450 460 eg0041 QYLTMETCEDGNDLVFFYQVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 QYLTMETCEDGNDLVFFYQVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDP 750 760 770 780 790 800 470 480 eg0041 NLDLNVFMSQEVLPAATSIL :::::::::::::::::::: gi|114 NLDLNVFMSQEVLPAATSIL 810 820 >>gi|123271499|emb|CAM24984.1| mutS homolog 5 (E. coli) (508 aa) initn: 2721 init1: 2721 opt: 2721 Z-score: 3257.2 bits: 612.2 E(): 8.8e-173 Smith-Waterman score: 3037; 94.094% identity (94.094% similar) in 508 aa overlap (12-489:1-508) 10 20 30 40 50 60 eg0041 VCPYHHLNPSWMWPVLLFVFLSQTVYSALGLRDACRSLPQSIQLFRDIAQEFSDDLHHIA ::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 MWPVLLFVFLSQTVYSALGLRDACRSLPQSIQLFRDIAQEFSDDLHHIA 10 20 30 40 70 80 90 100 110 120 eg0041 SLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKELENLDSRIPSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 SLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKELENLDSRIPSC 50 60 70 80 90 100 130 140 150 160 170 180 eg0041 SVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSARTKELDALLGDLHC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 SVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSARTKELDALLGDLHC 110 120 130 140 150 160 190 200 210 220 230 240 eg0041 EIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYSRPRYSPQVLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 EIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYSRPRYSPQVLG 170 180 190 200 210 220 250 260 270 280 290 300 eg0041 VRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 VRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVG 230 240 250 260 270 280 310 320 330 340 350 360 eg0041 SFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 SFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGK 290 300 310 320 330 340 370 380 390 400 410 420 eg0041 GTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLVQYLTMETCEDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 GTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLVQYLTMETCEDG 350 360 370 380 390 400 430 440 450 eg0041 NDLVFFYQV------------------------------SDLIRSGKPIKPVKDLLKKNQ ::::::::: ::::::::::::::::::::: gi|123 NDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRSGKPIKPVKDLLKKNQ 410 420 430 440 450 460 460 470 480 eg0041 MENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL ::::::::::::::::::::::::::::::::::::::: gi|123 MENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL 470 480 490 500 >>gi|3108220|gb|AAC62533.1| MutS homolog 5 [Homo sapiens (834 aa) initn: 2636 init1: 2636 opt: 2641 Z-score: 3158.2 bits: 594.6 E(): 2.8e-167 Smith-Waterman score: 2957; 93.587% identity (93.788% similar) in 499 aa overlap (21-489:336-834) 10 20 30 40 50 eg0041 VCPYHHLNPSWMWPVLLFVFLSQTVYSALGLRDACRSLPQSIQLFRDIAQ : .::::::::::::::::::::::::::: gi|310 LHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLFRDIAQ 310 320 330 340 350 360 60 70 80 90 100 110 eg0041 EFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|310 EFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKEL 370 380 390 400 410 420 120 130 140 150 160 170 eg0041 ENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSARTKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|310 ENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSARTKE 430 440 450 460 470 480 180 190 200 210 220 230 eg0041 LDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|310 LDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYS 490 500 510 520 530 540 240 250 260 270 280 290 eg0041 RPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|310 RPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQV 550 560 570 580 590 600 300 310 320 330 340 350 eg0041 GLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|310 GLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQ 610 620 630 640 650 660 360 370 380 390 400 410 eg0041 SLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|310 SLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLVQ 670 680 690 700 710 720 420 430 440 eg0041 YLTMETCEDGNDLVFFYQV------------------------------SDLIRSGKPIK ::::::::::::::::::: ::::::::::: gi|310 YLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLLDKLVARGKEVSDLIRSGKPIK 730 740 750 760 770 780 450 460 470 480 eg0041 PVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL ::::::::::::::::::::::::::::::::::::::::::::::::: gi|310 PVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL 790 800 810 820 830 >>gi|3914060|sp|O43196.1|MSH5_HUMAN MutS protein homolog (834 aa) initn: 2636 init1: 2636 opt: 2641 Z-score: 3158.2 bits: 594.6 E(): 2.8e-167 Smith-Waterman score: 2957; 93.587% identity (93.788% similar) in 499 aa overlap (21-489:336-834) 10 20 30 40 50 eg0041 VCPYHHLNPSWMWPVLLFVFLSQTVYSALGLRDACRSLPQSIQLFRDIAQ : .::::::::::::::::::::::::::: gi|391 LHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLFRDIAQ 310 320 330 340 350 360 60 70 80 90 100 110 eg0041 EFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|391 EFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKEL 370 380 390 400 410 420 120 130 140 150 160 170 eg0041 ENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSARTKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|391 ENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEINGLDFMFLSEEKLHYRSARTKE 430 440 450 460 470 480 180 190 200 210 220 230 eg0041 LDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|391 LDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYS 490 500 510 520 530 540 240 250 260 270 280 290 eg0041 RPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|391 RPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQV 550 560 570 580 590 600 300 310 320 330 340 350 eg0041 GLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|391 GLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQ 610 620 630 640 650 660 360 370 380 390 400 410 eg0041 SLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|391 SLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLVQ 670 680 690 700 710 720 420 430 440 eg0041 YLTMETCEDGNDLVFFYQV------------------------------SDLIRSGKPIK ::::::::::::::::::: ::::::::::: gi|391 YLTMETCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRSGKPIK 730 740 750 760 770 780 450 460 470 480 eg0041 PVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL ::::::::::::::::::::::::::::::::::::::::::::::::: gi|391 PVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPAATSIL 790 800 810 820 830 489 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Fri Aug 8 13:52:17 2008 done: Fri Aug 8 13:54:39 2008 Total Scan time: 883.150 Total Display time: 0.170 Function used was FASTA [version 34.26.5 April 26, 2007]