hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-13544052/chunk_1/iprscan-20080808-13544052.nocrc
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Query sequence: eg00416
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00488.12.fs MutS domain V                                  175.2    9.9e-53   1
PF00488.12.ls MutS domain V                                  137.6    3.1e-38   1
PF05190.8.fs MutS family domain IV                           47.3    1.1e-12   1
PF05190.8.ls MutS family domain IV                           49.3    1.2e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF05190.8.fs   1/1      83   181 ..     1   102 []    47.3  1.1e-12
PF05190.8.ls   1/1      83   181 ..     1   102 []    49.3  1.2e-11
PF00488.12.fs   1/1     229   377 ..     1   157 [.   175.2  9.9e-53
PF00488.12.ls   1/1     229   449 ..     1   245 []   137.6  3.1e-38

Alignments of top-scoring domains:
PF05190.8.fs: domain 1 of 1, from 83 to 181: score 47.3, E = 1.1e-12
                   *->gfdeeLDelrdlleeleeelaeleakere..rlgidpkksLkvgynk
                      ++d+e+De +++l+ l ++l e  +ke e+ +++i   +s+ v y++
     eg00416    83    NIDPEIDEKKRRLMGLPSFLTEVARKELEnlDSRI---PSCSVIYIP 126  

                   vlGYyievtrseakkvRrlPkGnnsdyir..rqtlKnseR...FtTpeLk
                   + G+++ ++r   ++v   ++   sd+++++++ +  se++ +++++++k
     eg00416   127 LIGFLLSIPRLP-SMV---EA---SDFEIngLDFMFLSEEklhYRSARTK 169  

                   eledelleaeee<-*
                   el++ l ++++e   
     eg00416   170 ELDALLGDLHCE    181  

PF05190.8.ls: domain 1 of 1, from 83 to 181: score 49.3, E = 1.2e-11
                   *->gfdeeLDelrdlleeleeelaeleakere..rlgidpkksLkvgynk
                      ++d+e+De +++l+ l ++l e  +ke e+ +++i   +s+ v y++
     eg00416    83    NIDPEIDEKKRRLMGLPSFLTEVARKELEnlDSRI---PSCSVIYIP 126  

                   vlGYyievtrseakkvRrlPkGnnsdyir..rqtlKnseR...FtTpeLk
                   + G+++ ++r   ++v   ++   sd+++++++ +  se++ +++++++k
     eg00416   127 LIGFLLSIPRLP-SMV---EA---SDFEIngLDFMFLSEEklhYRSARTK 169  

                   eledelleaeee<-*
                   el++ l ++++e   
     eg00416   170 ELDALLGDLHCE    181  

PF00488.12.fs: domain 1 of 1, from 229 to 377: score 175.2, E = 9.9e-53
                   *->YvRPeftesd.aegelhIegGRHPVVEavlkrdagnFVpNDvdlske
                      Y RP+  ++  +   ++I++GRHP  E      a +FVpN+++++ +
     eg00416   229    YSRPRYSPQVlG---VRIQNGRHPLMELC----ARTFVPNSTECGGD 268  

                   rlhsrillITGPNMgGKSTYlRQvALIvlMAQiGSFVPAesAeIgivDrI
                   +  +r  +ITGPN +GKS Yl+Qv+LI+ MA +GSFVPAe+AeIg vD+I
     eg00416   269 K--GRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAI 316  

                   FTRIGAsDdLakGrSTFMVEMlETAnILhnATdkSLVilDElGRGTSTyD
                   FTRI +  ++  G STFM   + +A   +nAT++SLV++DE G GT T D
     eg00416   317 FTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVD 366  

                   GlaIAwAvaEy<-*
                   Gla+  Av+++   
     eg00416   367 GLALLAAVLRH    377  

PF00488.12.ls: domain 1 of 1, from 229 to 449: score 137.6, E = 3.1e-38
                   *->YvRPeftesd.aegelhIegGRHPVVEavlkrdagnFVpNDvdlske
                      Y RP+  ++  +   ++I++GRHP  E      a +FVpN+++++ +
     eg00416   229    YSRPRYSPQVlG---VRIQNGRHPLMELC----ARTFVPNSTECGGD 268  

                   rlhsrillITGPNMgGKSTYlRQvALIvlMAQiGSFVPAesAeIgivDrI
                   +  +r  +ITGPN +GKS Yl+Qv+LI+ MA +GSFVPAe+AeIg vD+I
     eg00416   269 K--GRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAI 316  

                   FTRIGAsDdLakGrSTFMVEMlETAnILhnATdkSLVilDElGRGTSTyD
                   FTRI +  ++  G STFM   + +A   +nAT++SLV++DE G GT T D
     eg00416   317 FTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVD 366  

                   GlaIAwAvaEy.LaekirArTLF.ATHYhELTkLaeklpa...VklyNvH
                   Gla+  Av+++ La    +  +F AT +  L +L   lp+++ V+   ++
     eg00416   367 GLALLAAVLRHwLARGPTCPHIFvATNFLSLVQLQ-LLPQgplVQ--YLT 413  

                   maavietdgdivFLykvkpGaadkSYGIhVAelAGLPesVverArevLae
                   m++  e+++d+vF y+v + +            +G P       + v + 
     eg00416   414 METC-EDGNDLVFFYQVSDLI-----------RSGKPI------KPVKDL 445  

                   LEer<-*
                   L++    
     eg00416   446 LKKN    449  

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