hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-13544052/chunk_1/iprscan-20080808-13544052.nocrc
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Query sequence: eg00416
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00534                                                 156.5    2.6e-42   1
SM00533                                                  51.1    1.5e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00533    1/1       4   254 ..     1   335 []    51.1  1.5e-10
SM00534    1/1     270   447 ..     1   199 []   156.5  2.6e-42

Alignments of top-scoring domains:
SM00533: domain 1 of 1, from 4 to 254: score 51.1, E = 1.5e-10
                   *->gkkgsLfslLnhckTpmGkRLLrrWLlqPLldlkeIneRldaVeell
                            +++Ln                                    
     eg00416     4    ------YHHLN------------------------------------ 8    

                   enqpelrqdlrqlLeLkripDleRllsrikrasprdllklydslealpse
                     +    + ++  L                   +   + l ++++ ++ +
     eg00416     9 --P----SWMWPVL-------------------LF--VFLSQTVYSAL-G 30   

                   irkllesles..pllgllksvlikplsellkeelellelllellvdddpl
                   +r+++ sl ++ +l+ +++++++++        l+++++l++ +vd++ +
     eg00416    31 LRDACRSLPQsiQLFRDIAQEFSDD--------LHHIASLIGKVVDFEGS 72   

                   evndgniglikdgfdpeLdelr.kiienlkeeeieellkklreaetgids
                   ++++   +++ +  dpe+de++++++        e + k+l++++++i+s
     eg00416    73 LAENR--FTVLPNIDPEIDEKKrRLMGLP-SFLTEVARKELENLDSRIPS 119  

                   lkigynkvrgdgYyievtksnaSllkkipkadfig.i.rvqslkn.terf
                   +++ y+   g  +++ +++  + ++++     f++++ ++  l+++  ++
     eg00416   120 CSVIYIPLIG--FLLSIPRLPS-MVEASD---FEInGlDFMFLSEeKLHY 163  

                   ttpelkelenelleakeeieelekeifrellekvlehlpeLralaqalae
                    + + kel++ l ++++ei+++e+ ++ +l+++vl+++ +L ++ ++ ++
     eg00416   164 RSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASR 213  

                   LDvLlSlArlAksaegnyvrPefsedgdgeleikngRHPvlEaq<-*
                   LDvLl+lA +A  ++++y rP  s+   g ++i+ngRHP++E++   
     eg00416   214 LDVLLALASAA--RDYGYSRPRYSPQVLG-VRIQNGRHPLMELC    254  

SM00534: domain 1 of 1, from 270 to 447: score 156.5, E = 2.6e-42
                   *->srlliITGPNMGGKSTyLRQvaLiviMAQiGsfVPAesAelpivDrI
                       r+ +ITGPN +GKS yL+Qv+Li++MA +GsfVPAe+Ae++ vD+I
     eg00416   270    GRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAI 316  

                   FtRiGasDslaqGrSTFmvEMlEtanILknATknSLVilDElGRGTSTyD
                   FtRi +  s++ G+STFm  ++++a   +nAT +SLV++DE+G GT T D
     eg00416   317 FTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVD 366  

                   GlAIAyAvlEyLlek..igaltLFaTHyheLtklad...nhpgVrnlhms
                   GlA+++Avl+++l +++++++++ aT + +L  l +  ++ p V+ l m+
     eg00416   367 GLALLAAVLRHWLARgpTCPHIFVATNFLSLVQL-QllpQGPLVQYLTME 415  

                   aleeeesgesqgddedlditfLYkltpGvagkSYGihVAklAGlPksvie
                     e+++           d++f Y+             V  l+    + i+
     eg00416   416 TCEDGN-----------DLVFFYQ-------------VSDLI-RSGKPIK 440  

                   rAkeilk<-*
                     k  lk   
     eg00416   441 PVKDLLK    447  

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