hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-14004672/chunk_1/iprscan-20080808-14004672.nocrc
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Query sequence: eg00444
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                       142.1    1.4e-39   5
PF00400.22.fs WD domain, G-beta repeat                       134.0    3.8e-37   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   1/5     409   447 ..     1    38 []    32.6  3.3e-08
PF00400.22.ls   1/5     409   447 ..     1    38 []    34.5  3.4e-07
PF00400.22.ls   2/5     455   493 ..     1    38 []    24.5  0.00035
PF00400.22.fs   2/5     455   493 ..     1    38 []    22.5  2.2e-05
PF00400.22.fs   3/5     500   529 ..     1    29 [.    15.9   0.0017
PF00400.22.fs   4/5     626   663 ..     1    38 []    15.1   0.0028
PF00400.22.ls   5/5     667   706 ..     1    38 []    49.9  7.8e-12
PF00400.22.fs   5/5     667   706 ..     1    38 []    47.9  1.6e-12

Alignments of top-scoring domains:
PF00400.22.fs: domain 1 of 5, from 409 to 447: score 32.6, E = 3.3e-08
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +  +++l+ H + V+ ++fs d g+ la+gS D t+ iW    
     eg00444   409    CYTQqILtEHCNEVWFCKFSND-GTKLATGSKDTTVIIWQ    447  

PF00400.22.ls: domain 1 of 5, from 409 to 447: score 34.5, E = 3.4e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +  +++l+ H + V+ ++fs d g+ la+gS D t+ iW    
     eg00444   409    CYTQqILtEHCNEVWFCKFSND-GTKLATGSKDTTVIIWQ    447  

PF00400.22.ls: domain 2 of 5, from 455 to 493: score 24.5, E = 0.00035
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       +++++l+gH  +V+ +a+spd  ++l+ ++ D +  +W    
     eg00444   455    LKLLkTLeGHAYGVSYIAWSPD-DNYLVACGPDDCSELWL    493  

PF00400.22.fs: domain 2 of 5, from 455 to 493: score 22.5, E = 2.2e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       +++++l+gH  +V+ +a+spd  ++l+ ++ D +  +W    
     eg00444   455    LKLLkTLeGHAYGVSYIAWSPD-DNYLVACGPDDCSELWL    493  

PF00400.22.fs: domain 3 of 5, from 500 to 529: score 15.9, E = 0.0017
                   *->geck.vl.gHtstVtcvafspdsgpllasgS<-*
                         ++  + H+++ t+va++pd g+++++g+   
     eg00444   500    ELRTkMSqSHEDSLTSVAWNPD-GKRFVTGG    529  

PF00400.22.fs: domain 4 of 5, from 626 to 663: score 15.1, E = 0.0028
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++ ++v +g   t+ ++   ++   ++asgS+D++++iW+   
     eg00444   626    RKYQgVTqGF-YTIHSCFGGHN-EDFIASGSEDHKVYIWH    663  

PF00400.22.ls: domain 5 of 5, from 667 to 706: score 49.9, E = 7.8e-12
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                        ++ +l+gHt tV+cv+++p  ++++as+S+Dgt++iW    
     eg00444   667    ELPIaELtGHTRTVNCVSWNPQIPSMMASASDDGTVRIWG    706  

PF00400.22.fs: domain 5 of 5, from 667 to 706: score 47.9, E = 1.6e-12
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                        ++ +l+gHt tV+cv+++p  ++++as+S+Dgt++iW    
     eg00444   667    ELPIaELtGHTRTVNCVSWNPQIPSMMASASDDGTVRIWG    706  

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