hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-14004672/chunk_1/iprscan-20080808-14004672.nocrc
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Query sequence: eg00444
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 164.3    1.2e-44   5
SM00668                                                  34.0      2e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00668    1/1     220   295 ..     1    60 []    34.0    2e-05
SM00320    1/5     408   447 ..     1    46 []    35.3  8.2e-06
SM00320    2/5     454   495 ..     1    46 []    34.6  1.3e-05
SM00320    3/5     498   538 ..     1    46 []    26.5   0.0038
SM00320    4/5     621   663 ..     1    46 []    19.0     0.48
SM00320    5/5     666   706 ..     1    46 []    48.9  6.6e-10

Alignments of top-scoring domains:
SM00668: domain 1 of 1, from 220 to 295: score 34.0, E = 2e-05
                   *->efkerkrirelilkGdwdeAlewlsslkpellednsA..........
                      e+ ++ ++r ++ +Gdwd+A+  l++lkp     +s +    ++  +
     eg00444   220    EHPSATKFRNHVMEGDWDKAENDLNELKPLV---HSPhaivvrgale 263  

                   .........keleFlLrkqkfiELvrvgktee<-*
                    +++  +    + FlL++qk++E +++gk+ e   
     eg00444   264 isqtllgiiVRMKFLLLQQKYLEYLEDGKVLE    295  

SM00320: domain 1 of 5, from 408 to 447: score 35.3, E = 8.2e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +    ++l+ H +  +V+ ++fs dg      + la+gs+D t+ +W
     eg00444   408    PcYTQQILTEHCN--EVWFCKFSNDG------TKLATGSkDTTVIIW 446  

                   d<-*
                       
     eg00444   447 Q    447  

SM00320: domain 2 of 5, from 454 to 495: score 34.6, E = 1.3e-05
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.Dgt..ir
                        kll+tl+gH    +V+ +a+spd+      n+l+++++D ++++ 
     eg00444   454    LlKLLKTLEGHAY--GVSYIAWSPDD------NYLVACGpDDCseLW 492  

                   lWd<-*
                   lW+   
     eg00444   493 LWN    495  

SM00320: domain 3 of 5, from 498 to 538: score 26.5, E = 0.0038
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                      t++l  ++++ H++  + tsva++pdg      +++++g++ g+ + 
     eg00444   498    TgELRTKMSqSHED--SLTSVAWNPDG------KRFVTGGqRGQFYQ 536  

                   Wd<-*
                    d   
     eg00444   537 CD    538  

SM00320: domain 4 of 5, from 621 to 663: score 19.0, E = 0.48
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++ l+r+++g t+  + +++  +  g    +++++asgs+D+++++W
     eg00444   621    DrVLVRKYQGVTQ--GFYTIHSCFGG---HNEDFIASGSeDHKVYIW 662  

                   d<-*
                   +   
     eg00444   663 H    663  

SM00320: domain 5 of 5, from 666 to 706: score 48.9, E = 6.6e-10
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +  ++++l+gHt    V++v+++p       p+++as+s+Dgt+r+W
     eg00444   666    SeLPIAELTGHTR--TVNCVSWNPQI-----PSMMASASdDGTVRIW 705  

                   d<-*
                       
     eg00444   706 G    706  

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