hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-14064254/chunk_1/iprscan-20080808-14064254.nocrc
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Query sequence: eg00472
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00498.16.fs FHA domain                                      44.7    1.3e-12   1
PF00498.16.ls FHA domain                                      46.5    8.5e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00498.16.fs   1/1     384   457 ..     1    94 []    44.7  1.3e-12
PF00498.16.ls   1/1     384   457 ..     1    94 []    46.5  8.5e-11

Alignments of top-scoring domains:
PF00498.16.fs: domain 1 of 1, from 384 to 457: score 44.7, E = 1.3e-12
                   *->vtiGRdsdsddilldddqdiqldg.siSrrHaeieykdggvglelaf
                      +t+GR  + +d  +d d+++++++ +iSr++ +i++k++g+      
     eg00472   384    ITLGR--ATKDNQIDVDLSLEGPAwKISRKQGVIKLKNNGD------ 422  

                   rpaqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<-
                             +++  +++   + ++++g+++ +g + rL++++v+++   
     eg00472   423 ----------FFIANEGRR--P-IYIDGRPVLCGSKWRLSNNSVVEIA   457  

                   *
                    
     eg00472     -   -    

PF00498.16.ls: domain 1 of 1, from 384 to 457: score 46.5, E = 8.5e-11
                   *->vtiGRdsdsddilldddqdiqldg.siSrrHaeieykdggvglelaf
                      +t+GR  + +d  +d d+++++++ +iSr++ +i++k++g+      
     eg00472   384    ITLGR--ATKDNQIDVDLSLEGPAwKISRKQGVIKLKNNGD------ 422  

                   rpaqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<-
                             +++  +++   + ++++g+++ +g + rL++++v+++   
     eg00472   423 ----------FFIANEGRR--P-IYIDGRPVLCGSKWRLSNNSVVEIA   457  

                   *
                    
     eg00472     -   -    

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