hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-05160875/chunk_1/iprscan-20090618-05160875.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: eg00560 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00168.20.fs C2 domain 408.5 6.9e-121 8 PF00168.20.ls C2 domain 398.1 1.2e-116 7 PF08151.2.fs FerI (NUC094) domain 194.9 6.8e-61 1 PF08150.2.fs FerB (NUC096) domain 195.5 1.2e-56 1 PF08150.2.ls FerB (NUC096) domain 197.4 3e-56 1 PF08151.2.ls FerI (NUC094) domain 196.9 4.4e-56 1 PF08165.2.ls FerA (NUC095) domain 129.4 9.5e-36 1 PF08165.2.fs FerA (NUC095) domain 127.4 3.8e-35 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00168.20.fs 1/8 48 132 .. 1 88 [] 91.3 1.4e-26 PF00168.20.ls 1/7 48 132 .. 1 88 [] 93.2 7.2e-25 PF00168.20.fs 2/8 300 380 .. 1 88 [] 53.5 2.4e-15 PF00168.20.ls 2/7 300 380 .. 1 88 [] 55.4 1.8e-13 PF08151.2.fs 1/1 381 452 .. 1 72 [] 194.9 6.8e-61 PF08151.2.ls 1/1 381 452 .. 1 72 [] 196.9 4.4e-56 PF00168.20.ls 3/7 459 557 .. 1 88 [] 68.6 1.9e-17 PF00168.20.fs 3/8 459 557 .. 1 88 [] 66.6 3e-19 PF08165.2.ls 1/1 758 823 .. 1 67 [] 129.4 9.5e-36 PF08165.2.fs 1/1 758 823 .. 1 67 [] 127.4 3.8e-35 PF08150.2.fs 1/1 850 925 .. 1 79 [] 195.5 1.2e-56 PF08150.2.ls 1/1 850 925 .. 1 79 [] 197.4 3e-56 PF00168.20.fs 4/8 1218 1308 .. 1 88 [] 86.6 3.3e-25 PF00168.20.ls 4/7 1218 1308 .. 1 88 [] 88.6 1.8e-23 PF00168.20.ls 5/7 1398 1485 .. 1 88 [] 14.1 0.012 PF00168.20.fs 5/8 1402 1485 .. 8 88 .] 16.7 0.0002 PF00168.20.ls 6/7 1665 1748 .. 1 88 [] 77.4 4.1e-20 PF00168.20.fs 6/8 1665 1748 .. 1 88 [] 75.5 6.9e-22 PF00168.20.fs 8/8 1989 2011 .. 65 88 .] 15.3 0.00054 Alignments of top-scoring domains: PF00168.20.fs: domain 1 of 8, from 48 to 132: score 91.3, E = 1.4e-26 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikktl L + +++A nLp k + sDP + +++ g +kk+Tkvik++ eg00560 48 LCCLLVRASNLPSAK-KDRRSDPVASLTFRG----VKKRTKVIKNSV 89 NPvWNEtFtFevpppdlqe..tLeieVyDydrfgrddflGevs<-* NPvWNE F++++ +l+++++L++ V+D+ ++gr+ flGe++ eg00560 90 NPVWNEGFEWDLKGIPLDQgsELHVVVKDHETMGRNRFLGEAK 132 PF00168.20.ls: domain 1 of 7, from 48 to 132: score 93.2, E = 7.2e-25 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikktl L + +++A nLp k + sDP + +++ g +kk+Tkvik++ eg00560 48 LCCLLVRASNLPSAK-KDRRSDPVASLTFRG----VKKRTKVIKNSV 89 NPvWNEtFtFevpppdlqe..tLeieVyDydrfgrddflGevs<-* NPvWNE F++++ +l+++++L++ V+D+ ++gr+ flGe++ eg00560 90 NPVWNEGFEWDLKGIPLDQgsELHVVVKDHETMGRNRFLGEAK 132 PF00168.20.fs: domain 2 of 8, from 300 to 380: score 53.5, E = 2.4e-15 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikktl +rV vie++ Lp ++ ++ P Vkv+ g q+k+T+++k++ eg00560 300 IRVQVIEGRQLPGVN-IK----PVVKVTAAG----QTKRTRIHKGN- 336 NPvWNEtFtFevpppdlqe...tLeieVyDydrfgrddflGevs<-* +P +NEt+ F++ + +++ ++++ i+V D+++++ d +lGe++ eg00560 337 SPLFNETLFFNLFDSPGELfdePIFITVVDSRSLRTDALLGEFR 380 PF00168.20.ls: domain 2 of 7, from 300 to 380: score 55.4, E = 1.8e-13 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikktl +rV vie++ Lp ++ ++ P Vkv+ g q+k+T+++k++ eg00560 300 IRVQVIEGRQLPGVN-IK----PVVKVTAAG----QTKRTRIHKGN- 336 NPvWNEtFtFevpppdlqe...tLeieVyDydrfgrddflGevs<-* +P +NEt+ F++ + +++ ++++ i+V D+++++ d +lGe++ eg00560 337 SPLFNETLFFNLFDSPGELfdePIFITVVDSRSLRTDALLGEFR 380 PF08151.2.fs: domain 1 of 1, from 381 to 452: score 194.9, E = 6.8e-61 *->lDvGtVYdePeHafmrKWlLLsDPdDfsaGaKGYLKvsmfVvGkGDe +DvGt+Y+eP+Ha++rKWlLLsDPdDfsaGa+GYLK+s++V+G+GDe eg00560 381 MDVGTIYREPRHAYLRKWLLLSDPDDFSAGARGYLKTSLCVLGPGDE 427 ppvekKdseeDkDDIEsNLLLPaGV<-* +p+e+Kd++eDk+DIEsNLL+P+GV eg00560 428 APLERKDPSEDKEDIESNLLRPTGV 452 PF08151.2.ls: domain 1 of 1, from 381 to 452: score 196.9, E = 4.4e-56 *->lDvGtVYdePeHafmrKWlLLsDPdDfsaGaKGYLKvsmfVvGkGDe +DvGt+Y+eP+Ha++rKWlLLsDPdDfsaGa+GYLK+s++V+G+GDe eg00560 381 MDVGTIYREPRHAYLRKWLLLSDPDDFSAGARGYLKTSLCVLGPGDE 427 ppvekKdseeDkDDIEsNLLLPaGV<-* +p+e+Kd++eDk+DIEsNLL+P+GV eg00560 428 APLERKDPSEDKEDIESNLLRPTGV 452 PF00168.20.ls: domain 3 of 7, from 459 to 557: score 68.6, E = 1.9e-17 *->LrVtvieAknLppkDk...............kngksDPYVkvylggd ++v++A++Lp +D+ ++ ++ + +++k+ ++DP+V+v++ g eg00560 459 FCLKVFRAEDLPQMDDavmdnvkqifgfesnKKNLVDPFVEVSFAG- 504 kkdqkkkTkvikktlNPvWNEtFtFevpppdlqetLeieVyDydrfgrdd ++ +k+ +kt NP+WN+ t++ +p++ e+ +i + D+dr++++d eg00560 505 ---KMLCSKILEKTANPQWNQNITLPAMFPSMCEKMRIRIIDWDRLTHND 551 flGevs<-* ++ ++ eg00560 552 IVATTY 557 PF00168.20.fs: domain 3 of 8, from 459 to 557: score 66.6, E = 3e-19 *->LrVtvieAknLppkDk...............kngksDPYVkvylggd ++v++A++Lp +D+ ++ ++ + +++k+ ++DP+V+v++ g eg00560 459 FCLKVFRAEDLPQMDDavmdnvkqifgfesnKKNLVDPFVEVSFAG- 504 kkdqkkkTkvikktlNPvWNEtFtFevpppdlqetLeieVyDydrfgrdd ++ +k+ +kt NP+WN+ t++ +p++ e+ +i + D+dr++++d eg00560 505 ---KMLCSKILEKTANPQWNQNITLPAMFPSMCEKMRIRIIDWDRLTHND 551 flGevs<-* ++ ++ eg00560 552 IVATTY 557 PF08165.2.ls: domain 1 of 1, from 758 to 823: score 129.4, E = 9.5e-36 *->lalkakdsaasvgelwLkLideliediaSktLpdiegkpsvTaLDrq lalka++s+++v++l+++L+deli++ +S++L+di+++ps+T+LD++ eg00560 758 LALKAQCSTEDVDSLVAQLTDELIAG-CSQPLGDIHETPSATHLDQY 803 IlkLRkrkLsqIrEaAlrlk<-* +++LR+++LsqI+EaAl+lk eg00560 804 LYQLRTHHLSQITEAALALK 823 PF08165.2.fs: domain 1 of 1, from 758 to 823: score 127.4, E = 3.8e-35 *->lalkakdsaasvgelwLkLideliediaSktLpdiegkpsvTaLDrq lalka++s+++v++l+++L+deli++ +S++L+di+++ps+T+LD++ eg00560 758 LALKAQCSTEDVDSLVAQLTDELIAG-CSQPLGDIHETPSATHLDQY 803 IlkLRkrkLsqIrEaAlrlk<-* +++LR+++LsqI+EaAl+lk eg00560 804 LYQLRTHHLSQITEAALALK 823 PF08150.2.fs: domain 1 of 1, from 850 to 925: score 195.5, E = 1.2e-56 *->PQnSlPDifIWMlsgeKRvAYaRiPAhdvLyStvgeeetGkdCGKvQ PQnSlPDi+IWMl+g+KRvAY+R+PAh+vL+S++g++++Gk+CGK+Q eg00560 850 PQNSLPDIVIWMLQGDKRVAYQRVPAHQVLFSRRGANYCGKNCGKLQ 896 TvfLklPgekgnGpAGWkVpaklrlyLWLGLs<-* T+fLk+P+ek++G+ ++p+++r++LW+GLs eg00560 897 TIFLKYPMEKVPGA---RMPVQIRVKLWFGLS 925 PF08150.2.ls: domain 1 of 1, from 850 to 925: score 197.4, E = 3e-56 *->PQnSlPDifIWMlsgeKRvAYaRiPAhdvLyStvgeeetGkdCGKvQ PQnSlPDi+IWMl+g+KRvAY+R+PAh+vL+S++g++++Gk+CGK+Q eg00560 850 PQNSLPDIVIWMLQGDKRVAYQRVPAHQVLFSRRGANYCGKNCGKLQ 896 TvfLklPgekgnGpAGWkVpaklrlyLWLGLs<-* T+fLk+P+ek++G+ ++p+++r++LW+GLs eg00560 897 TIFLKYPMEKVPGA---RMPVQIRVKLWFGLS 925 PF00168.20.fs: domain 4 of 8, from 1218 to 1308: score 86.6, E = 3.3e-25 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikktl Lr++ ++A++L+++D k + sDPY+ v+++ q +kT v+k+tl eg00560 1218 LRCYMYQARDLAAMD-KDSFSDPYAIVSFLH----QSQKTVVVKNTL 1259 NPvWNEtFtFe.v....pppdlqe...tLeieVyDydrfgrddflGevs< NP+W++t+ F++++ + p++++e+++++++e+yD+d++g d+f+G+++ eg00560 1260 NPTWDQTLIFYeIeifgEPATVAEqppSIVVELYDHDTYGADEFMGRCI 1308 -* eg00560 - - PF00168.20.ls: domain 4 of 7, from 1218 to 1308: score 88.6, E = 1.8e-23 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikktl Lr++ ++A++L+++D k + sDPY+ v+++ q +kT v+k+tl eg00560 1218 LRCYMYQARDLAAMD-KDSFSDPYAIVSFLH----QSQKTVVVKNTL 1259 NPvWNEtFtFe.v....pppdlqe...tLeieVyDydrfgrddflGevs< NP+W++t+ F++++ + p++++e+++++++e+yD+d++g d+f+G+++ eg00560 1260 NPTWDQTLIFYeIeifgEPATVAEqppSIVVELYDHDTYGADEFMGRCI 1308 -* eg00560 - - PF00168.20.ls: domain 5 of 7, from 1398 to 1485: score 14.1, E = 0.012 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikkt. +++ +n + + + s+P +v++gg q+ ++ vi++ + eg00560 1398 IEILAWGLRNMKSYQ-LANISSPSLVVECGG----QTVQSCVIRNLr 1439 lNPvWN.....EtFtFevpppdlqe.tLeieVyDydrfgrddflGevs<- NP ++ + + +++ ++l ++++++V D++ fgr ++G+++ eg00560 1440 KNPNFDictlfMEVMLP--REELYCpPITVKVIDNRQFGRRPVVGQCT 1485 * eg00560 - - PF00168.20.fs: domain 5 of 8, from 1402 to 1485: score 16.7, E = 0.0002 *->AknLppkDk..kngksDPYVkvylggdkkdqkkkTkvikkt.lNPvW A +L+++ + ++ s+P +v++gg q+ ++ vi++ + NP + eg00560 1402 AWGLRNMKSyqLANISSPSLVVECGG----QTVQSCVIRNLrKNPNF 1444 N.....EtFtFevpppdlqe.tLeieVyDydrfgrddflGevs<-* + + + +++ ++l ++++++V D++ fgr ++G+++ eg00560 1445 DictlfMEVMLP--REELYCpPITVKVIDNRQFGRRPVVGQCT 1485 PF00168.20.ls: domain 6 of 7, from 1665 to 1748: score 77.4, E = 4.1e-20 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt +r+++++A +L pkD +ngk+DPY k+++g+ +++ + i+ t eg00560 1665 VRIYIVRAFGLQPKD-PNGKCDPYIKISIGK---KsVSDQDNYIPCT 1707 lNPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-* l Pv+ +F+++ ++p ++ L+i++yDyd +++d+ +Ge++ eg00560 1708 LEPVFGKMFELTCTLPLEKD-LKITLYDYDLLSKDEKIGETV 1748 PF00168.20.fs: domain 6 of 8, from 1665 to 1748: score 75.5, E = 6.9e-22 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt +r+++++A +L pkD +ngk+DPY k+++g+ +++ + i+ t eg00560 1665 VRIYIVRAFGLQPKD-PNGKCDPYIKISIGK---KsVSDQDNYIPCT 1707 lNPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-* l Pv+ +F+++ ++p ++ L+i++yDyd +++d+ +Ge++ eg00560 1708 LEPVFGKMFELTCTLPLEKD-LKITLYDYDLLSKDEKIGETV 1748 PF00168.20.fs: domain 8 of 8, from 1989 to 2011: score 15.3, E = 0.00054 *->qetLeieVyDydrfgrddflGevs<-* ++ ++++++D+d+f+ ddflG + eg00560 1989 AR-VVFQIWDNDKFSFDDFLGSLQ 2011 //