hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-05160875/chunk_1/iprscan-20090618-05160875.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: eg00560 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00239 337.1 1.2e-96 7 SM00693 175.0 7.5e-48 2 SM00694 111.5 9.4e-29 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00239 1/7 47 147 .. 1 92 [] 71.8 8.5e-17 SM00239 2/7 299 395 .. 1 92 [] 63.3 3e-14 SM00239 3/7 458 572 .. 1 92 [] 43.7 2.5e-08 SM00693 1/2 938 997 .. 1 73 [] 84.8 1e-20 SM00693 2/2 1010 1066 .. 1 73 [] 90.1 2.6e-22 SM00694 1/2 1075 1113 .. 1 42 [] 60.1 2.9e-13 SM00694 2/2 1132 1165 .. 1 42 [] 51.5 1.1e-10 SM00239 4/7 1217 1325 .. 1 92 [] 69.1 5.7e-16 SM00239 5/7 1402 1501 .. 1 92 [] 7.3 12 SM00239 6/7 1664 1763 .. 1 92 [] 54.9 1e-11 SM00239 7/7 1897 2026 .. 1 92 [] 27.1 0.0024 Alignments of top-scoring domains: SM00239: domain 1 of 7, from 47 to 147: score 71.8, E = 8.5e-17 *->tLtvkiisArnLp........DPYVkvs......kTkvvkktlsgfN L++ +++A nLp+ ++++++DP + ++ ++ +++Tkv+k++ N eg00560 47 MLCCLLVRASNLPsakkdrrsDPVASLTfrgvkkRTKVIKNSV---N 90 PvWnEesetFeFevpp......s.LeieVyDk......dfiGrvtippnn PvWnE Fe ++ + +++s+L++ V+D+++ ++++f+G++ +p eg00560 91 PVWNE---GFEWDLKGipldqgSeLHVVVKDHetmgrnRFLGEAKVP--- 134 ahqhsadglihlsell.ggrh.kl<-* l+e+l + + eg00560 135 -----------LREVLaTPSLsAS 147 SM00239: domain 2 of 7, from 299 to 395: score 63.3, E = 3e-14 *->tLtvkiisArnLp....DPYVkvs......kTkvvkktlsgfNPvWn +++v +i++r+Lp+ + P Vkv+ +++++T+++k++ +P +n eg00560 299 QIRVQVIEGRQLPgvniKPVVKVTaagqtkRTRIHKGN----SPLFN 341 EesetFeFevpp.......s.LeieVyDk......dfiGrvtippnnahq E t++F++ +++++ + ++ i+V D+++ +++ ++G+++++ eg00560 342 E---TLFFNLFDspgelfdEpIFITVVDSrslrtdALLGEFRMD------ 382 hsadglihlsell.ggrh.kl<-* + ++ +++rh l eg00560 383 --------VGTIYrEPRHaYL 395 SM00239: domain 3 of 7, from 458 to 572: score 43.7, E = 2.5e-08 *->tLtvkiisArnLp........................DPYVkvs... +++k+++A++Lp ++ ++ + + +++++ DP+V+vs + eg00560 458 HFCLKVFRAEDLPqmddavmdnvkqifgfesnkknlvDPFVEVSfag 504 ...kTkvvkktlsgfNPvWnEesetFeFevpp....s.LeieVyDk.... + ++k+ +kt NP+Wn+ ++++ ++ +++i++ D+++ + eg00560 505 kmlCSKILEKTA---NPQWNQ---NITLPAMFpsmcEkMRIRIIDWdrlt 548 ..dfiGrvtippnnahqhsadglihlsell.ggrh.kl<-* ++d++ +++++ +s++ g+ + eg00560 549 hnDIVATTYLS--------------MSKISaPGGEiEV 572 SM00693: domain 1 of 2, from 938 to 997: score 84.8, E = 1e-20 *->pirfraevYENQrRwlgvggWkttgLpyDRrdkysDasgnqegtpsg +++++ae+YEN++++ vg+W+ttgL+y +k+sD+ +g eg00560 938 KLSVFAETYENETKLALVGNWGTTGLTY---PKFSDV--------TG 973 rvelppdelecPspgWeWeddnWsld<-* +++lp+d+++ Ps+gW W +d W+++ eg00560 974 KIKLPKDSFR-PSAGWTWAGD-WFVC 997 SM00693: domain 2 of 2, from 1010 to 1066: score 90.1, E = 2.6e-22 *->pirfraevYENQrRwlgvggWkttgLpyDRrdkysDasgnqegtpsg +++f +ev+ENQ+R++g+ +W+++ +d+y+D+ + g eg00560 1010 HLSFVEEVFENQTRLPGG-QWIYM------SDNYTDV----N----G 1041 rvelppdelecPspgWeWeddnWsld<-* ++ lp+d++ec ++gW+Wed++Ws+d eg00560 1042 EKVLPKDDIEC-PLGWKWEDEEWSTD 1066 SM00694: domain 1 of 2, from 1075 to 1113: score 60.1, E = 2.9e-13 *->GWqYsdnfvf.RkkpakyhkeekmtdfHHnvRRRrWvRrrrlk<-* GW+Ys++++++Rk p+++++ ekm+++ +RRRrWvR+rr++ eg00560 1075 GWEYSITIPPeRK-PKHWVPAEKMYYT---HRRRRWVRLRRRD 1113 SM00694: domain 2 of 2, from 1132 to 1165: score 51.5, E = 1.1e-10 *->GWqYsdnfvfRkkpakyhkeekmtdfHHnvRRRrWvRrrrlk<-* GW+Y++ f +k+h+e+++td +RRRrW+Rr++++ eg00560 1132 GWEYASLF-----GWKFHLEYRKTDA---FRRRRWRRRMEPL 1165 SM00239: domain 4 of 7, from 1217 to 1325: score 69.1, E = 5.7e-16 *->tLtvkiisArnLp........DPYVkvs......kTkvvkktlsgfN L++++++Ar+L ++++ +DPY++vs ++++kT vvk+tl N eg00560 1217 HLRCYMYQARDLAamdkdsfsDPYAIVSflhqsqKTVVVKNTL---N 1260 PvWnEesetFeFevpp............s.LeieVyDk......dfiGrv P+W++ t+ F+ ++ +++ + +++ ++++e+yD+++ + ++f+Gr+ eg00560 1261 PTWDQ---TLIFYEIEifgepatvaeqpPsIVVELYDHdtygadEFMGRC 1307 tippnnahqhsadglihlsell.ggrh.kl<-* ++ p l+++++ + + eg00560 1308 ICQPS------------LERMPrLAWFpLT 1325 SM00239: domain 5 of 7, from 1402 to 1501: score 7.3, E = 12 *->tLtvkiisArnLp...DPYVkvs......kTkvvkktlsgfNPvWnE ++ ++ +L + + P +v+ ++++ ++ v+++ + NP ++ eg00560 1402 AWGLRNMKSYQLAnisSPSLVVEcggqtvQSCVIRNLRK--NPNFDI 1446 esetFeFevpp.......s.LeieVyDk......dfiGrvtippnnahqh +t+++ev ++++ +++++V D + +++ ++G++ti++ eg00560 1447 --CTLFMEVMLpreelycPpITVKVIDNrqfgrrPVVGQCTIRS------ 1488 sadglihlsell.ggrh.kl<-* l++ l + + + eg00560 1489 -------LESFLcDPYSaES 1501 SM00239: domain 6 of 7, from 1664 to 1763: score 54.9, E = 1e-11 *->tLtvkiisArnLp........DPYVkvs........kTkvvkktlsg +++++i++A +L +++++++ DPY+k+s ++++ +++ + +++tl eg00560 1664 LVRIYIVRAFGLQpkdpngkcDPYIKISigkksvsdQDNYIPCTL-- 1708 fNPvWnEesetFeFevpp...s.LeieVyDk......dfiGrvtippnna Pv++ +Fe++++ + +++L+i++yD++ ++++ iG+++++ eg00560 1709 -EPVFGK---MFELTCTLpleKdLKITLYDYdllskdEKIGETVVD---- 1750 hqhsadglihlsell.ggrh.kl<-* l+ l + ++ eg00560 1751 ----------LENRLlSKFGaRC 1763 SM00239: domain 7 of 7, from 1897 to 2026: score 27.1, E = 0.0024 *->tLtvkiisArnLp............DPYVkvs.........kTkvvk L++ i r+ + ++ + ++ + +D YVk + + +++kT v+ eg00560 1897 FLRCIIWNTRDVIlddlsltgekmsDIYVKGWmigfeehkqKTDVHY 1943 ktls.gfNPvWnEesetFeFevpp........................s. ++l + N W F F+ p ++ + +++ + ++++++ +++ eg00560 1944 RSLGgEGNFNWRF---IFPFDYLPaeqvctiakkdafwrldkteskipAr 1990 LeieVyDk......dfiGrvtippnnahqhsadglihlsell.ggrh.kl ++++++D ++ + +df+G ++++ l+++++ ++ k eg00560 1991 VVFQIWDNdkfsfdDFLGSLQLD--------------LNRMPkPAKTaKK 2026 <-* eg00560 - - //