hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-14130927/chunk_1/iprscan-20080808-14130927.nocrc
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Query sequence: eg01013
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00239                                                 201.2    9.6e-56   3
SM00109                                                  77.0    2.4e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00239    1/3      32   123 ..     1    92 []    47.2  2.2e-09
SM00109    1/1     507   556 ..     1    61 []    77.0  2.4e-18
SM00239    2/3     630   737 ..     1    92 []    89.5  4.1e-22
SM00239    3/3    1468  1574 ..     1    92 []    64.5  1.3e-14

Alignments of top-scoring domains:
SM00239: domain 1 of 3, from 32 to 123: score 47.2, E = 2.2e-09
                   *->tLtvkiisArnLp.....DPYVkvs.....kTkvvkktlsgfNPvWn
                      +L+v++++A+   ++++ + YV+++ ++ + T v  +      P W+
     eg01013    32    LLCVRVKRAKFQGspdkfNTYVTLKvqnvkSTTVAVRGD---QPSWE 75   

                   EesetFeFevpp..s.LeieVyDk.....dfiGrvtippnnahqhsadgl
                   +    F+Fe+++ + +L +eV++k+   +  +G+v+i             
     eg01013    76 Q---DFMFEISRldLgLSVEVWNKgliwdTMVGTVWIA------------ 110  

                   ihlsell.ggrh.kl<-*
                     l++++++++ ++    
     eg01013   111 --LKTIRqSDEEgPG    123  

SM00109: domain 1 of 1, from 507 to 556: score 77.0, E = 2.4e-18
                   *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC
                      H+f+ +t ++pt+C+ C+ ++wg+++q     g+rCseC+vkcH+kC
     eg01013   507    HNFEVWTAtTPTYCYECEGLLWGIARQ-----GMRCSECGVKCHEKC 548  

                   aekvpaqshksglsC<-*
                   ++ ++a       +C   
     eg01013   549 QDLLNA-------DC    556  

SM00239: domain 2 of 3, from 630 to 737: score 89.5, E = 4.1e-22
                   *->tLtvkiisArnLp........DPYVkvs......kTkvvkktlsgfN
                      ++t+++++A++L  +++++++DPYV+v+ ++++++Tk++ ++l   N
     eg01013   630    KITITVVCAQGLQakdktgssDPYVTVQvsktkkRTKTIFGNL---N 673  

                   PvWnEesetFeFevpp..s.LeieVyDk.................dfiGr
                   PvW+E   +F+Fe+++++++++++V+D++++ +++ + + +++++df+G+
     eg01013   674 PVWEE---KFHFECHNssDrIKVRVWDEdddiksrvkqrlkresdDFLGQ 720  

                   vtippnnahqhsadglihlsell.ggrh.kl<-*
                   ++i               +++l ++     +   
     eg01013   721 TIIE--------------VRTLSgEMDVwYN    737  

SM00239: domain 3 of 3, from 1468 to 1574: score 64.5, E = 1.3e-14
                   *->tLtvkiisArnLp.......DPYVkvs.............kTkvvkk
                      ++tvk++ A++L+  + +   P+V+v+  ++++++++++  Tk + +
     eg01013  1468    KVTVKVVAANDLKwqtagmfRPFVEVTmvgphqsdkkrkfTTKSKSN 1514 

                   tlsgfNPvWnEesetFeFevpp......s.LeieVyDk......dfiGrv
                   +     P++nE   tF+F + +++++++ +L+i V+D+   ++++++G +
     eg01013  1515 NW---APKYNE---TFHFLLGNeegpesYeLQICVKDYyfaredRVLGLA 1558 

                   tippnnahqhsadglihlsell.ggrh.kl<-*
                   ++p              l+++   g    +   
     eg01013  1559 VMP--------------LRDVTaKGSCaCW    1574 

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