hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-14195882/chunk_1/iprscan-20080808-14195882.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: eg01033 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00146 432.2 2.8e-125 1 SM00145 267.7 8.9e-76 1 SM00144 132.8 3.6e-35 1 SM00142 125.1 7.5e-33 1 SM00312 112.6 4.4e-29 1 SM00239 66.8 2.7e-15 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00144 1/1 419 522 .. 1 116 [] 132.8 3.6e-35 SM00142 1/1 684 793 .. 1 133 [] 125.1 7.5e-33 SM00239 1/2 695 817 .. 1 92 [] 2.9 36 SM00145 1/1 871 1058 .. 1 232 [] 267.7 8.9e-76 SM00146 1/1 1144 1406 .. 1 336 [] 432.2 2.8e-125 SM00312 1/1 1432 1544 .. 1 142 [] 112.6 4.4e-29 SM00239 2/2 1583 1687 .. 1 92 [] 63.9 2e-14 Alignments of top-scoring domains: SM00144: domain 1 of 1, from 419 to 522: score 132.8, E = 3.6e-35 *->ssrlvPeplpkktiankilivvhlekrvhnkqqtktlkvnpnctpds s+++++++++ ++++++++++ +e + q ++t+++++++t+++ eg01033 419 SPVTAQRNIC--GENASVKVSIDIE----GFQLPVTFTCDVSSTVEI 459 vleealtKfakklslhdqedptdegdYiLKVcGrdEYllgdhpLgsfeyi ++++al++ ++++++q+d++ +Y+LKVcG++E+l+++h+Lgs+e+i eg01033 460 IIMQALCW---VHDDLNQVDVG---SYVLKVCGQEEVLQNNHCLGSHEHI 503 rnclkngtephLvLvelsk<-* +nc+k++te+ L+L+++s+ eg01033 504 QNCRKWDTEIRLQLLTFSA 522 SM00142: domain 1 of 1, from 684 to 793: score 125.1, E = 7.5e-33 *->vkiesLwdgkrplvalPhestialihgiplnwsslyesscvdlyvei ++++++w+ +++l+ +ti+++hgi nw s+ye ++y+ + eg01033 684 KSVKEAWTTTEQLQ-----FTIFAAHGISSNWVSNYE----KYYLIC 721 qLyhGvgkllclpvsTsykn.yvkaffnrtiiltvkWnewltftpikisd +L+h+ gk+l++p++++++++y k+ff+ +kW+e+++f pi+is+ eg01033 722 SLSHN-GKDLFKPIQSKKVGtY-KNFFYL-----IKWDELIIF-PIQISQ 763 LPreArLcitiyevkddskksepfgsvlVgssnlslf<-* LP e++L++t++++ ++s++s +sn++ + eg01033 764 LPLESVLHLTLFGILNQSSGSS-------PDSNKQRK 793 SM00239: domain 1 of 2, from 695 to 817: score 2.9, E = 36 *->tLtvkiisArnLp........DPYVkvs............kTkvvkk +L +i+ A+++ ++ ++ Y + s ++++++ ++ ++k v eg01033 695 QLQFTIFAAHGISsnwvsnyeKYYLICSlshngkdlfkpiQSKKVGT 741 tls.gfNPvWnEesetFeFevpp......s.LeieVyDk........... +W+E + F+++ ++ + +s L+++++ + ++++++++ eg01033 742 YKNfFYLIKWDE---LIIFPIQIsqlpleSvLHLTLFGIlnqssgsspds 788 .......dfiGrvtippnnahqhsadglihlsell.ggrh.kl<-* ++ +++++ +G+v++p l + ++ + eg01033 789 nkqrkgpEALGKVSLP--------------LFDFKrFLTCgTK 817 SM00145: domain 1 of 1, from 871 to 1058: score 267.7, E = 8.9e-76 *->drdlkpsldseerdrLeaIlkydplyeLteeekdLiWkfRhyyltnn ++l l ++++ +L++Il++d++ L++e+k ++W++R yy+ ++ eg01033 871 QHNLET-LENDIKGKLLDILHKDSSLGLSKEDKAFLWEKR-YYCFKH 915 pkALplvcgPKfLl.svnWsdadevaqalsLLkkWvnapldpedALELLd p++Lp K+L +++nW++ + +a+++sLL++W + l p+ ALELLd eg01033 916 PNCLP-----KILAsAPNWKWVN-LAKTYSLLHQW--PALYPLIALELLD 957 pkFpdnNvpkVRayAVsrLesasDeeLllYLLQLVQALKYEnlddiksle +kF+d ++VR+ AV ++e+ sD+eL + L+Q+VQALKYE eg01033 958 SKFAD---QEVRSLAVTWIEAISDDELTDLLPQFVQALKYE--------- 995 cefdqdvsasktkeedgpyldSpLarFLLeRAlkNpriGhffyWyLksEi yl+S L++FLL+RAl N++i+h +yW+Lk+ + eg01033 996 -----------------IYLNSSLVQFLLSRALGNIQIAHNLYWLLKDAL 1028 ekddslhdphvserfgllleaylrgctgthlkelkk<-* hd ++s r+ ++l a+l++ + + +el+k eg01033 1029 ------HDVQFSTRYEHVLGALLSVGGKRLREELLK 1058 SM00146: domain 1 of 1, from 1144 to 1406: score 432.2, E = 2.8e-125 *->avIfKggDDLRQDalvlQllrlmdklLkkdsetrrldLhlrpYkvlp v+fK+g+DLRQD+l+lQ++++mdk++ k+ +ldL++ ++k+l+ eg01033 1144 NVMFKVGEDLRQDMLALQMIKIMDKIWLKE----GLDLRMVIFKCLS 1186 tgpksGliEvvpnsetlheIlkelrkkkkipldykqlfmldmlvaeieka tg + G++E+vp s+tl++I++e+ eg01033 1187 TGRDRGMVELVPASDTLRKIQVEY-------------------------- 1210 qyptitlakakkkalrykhatlleklkvfegatsafkppvLydwfkekfp g+t++fk+ +L++w+++++p eg01033 1211 ------------------------------GVTGSFKDKPLAEWLRKYNP 1230 dpneiyfeardnFtrScAgySvvtYiLGlGDRHndNImldrktGhlfHID ++ e+y +a +nF++ScAg++v+tY+LG++DRHndNIml tGh+fHID eg01033 1231 SE-EEYEKASENFIYSCAGCCVATYVLGICDRHNDNIMLR-STGHMFHID 1278 FGfilgngpklpgfklfgRErvPFrLTpemvdvmGgGgkpsgvfglFrsl FG +lg+++++ fk R+r+PF+LT++m +v++gG kp+ f+lF++l eg01033 1279 FGKFLGHAQMFGSFK---RDRAPFVLTSDMAYVINGGEKPTIRFQLFVDL 1325 CerayralRknsnllmnllelMlsdglmpewrsgekdikylrerlrldvl C++ay+++Rk++nl++nll+lM+ +gl pe++s d+ky+r++l+++ + eg01033 1326 CCQAYNLIRKQTNLFLNLLSLMIPSGL-PELTSI-QDLKYVRDALQPQ-T 1372 sdeeaaeyfkktektkliessleslttrlndlfhllaql<-* +d ea+ +f++ liessl+s t++n+++h+laql eg01033 1373 TDAEATIFFTR-----LIESSLGSIATKFNFFIHNLAQL 1406 SM00312: domain 1 of 1, from 1432 to 1544: score 112.6, E = 4.4e-29 *->dniaivavveeetsgkkrgdgkhyyyvieietstnedveewtvyRRY ++i++v+v +++ kk++++khy+yv++i +++ e + v+R + eg01033 1432 GRIKEVSVFTYH---KKYNPDKHYIYVVRILREGQI--EPSFVFRTF 1473 sdFleLhskLlkkfpqekrrriiPplPekkllgryreraekesmkvkksl +F+eLh+kL+ fp ++++P +P + +lgr+ eg01033 1474 DEFQELHNKLSIIFP----LWKLPGFPNRMVLGRT--------------- 1504 nnfseefiekRrrgLerYLqkllnhPelinhyrvsevvleFLess<-* + ++++ kR++ L++YLq+l+n+++ +++ +++v +F+++ eg01033 1505 --HIKDVAAKRKIELNSYLQSLMNASTDVAE---CDLVCTFFHPL 1544 SM00239: domain 2 of 2, from 1583 to 1687: score 63.9, E = 2e-14 *->tLtvkiisArnLp.......DPYVkvs...........kTkvvkktl tL ++++ ++L + ++ +++PYVk + +++++++++kTk+ +kt eg01033 1583 TLFIMVMHIKDLVtedgadpNPYVKTYllpdnhktskrKTKISRKTR 1629 sgfNPvWnEesetFeFevpp......s.LeieVyDk......dfiGrvti NP++nE +++++ ++++ ++++L+++V + ++ +++ f+G vt+ eg01033 1630 ---NPTFNE---MLVYSGYSketlrqReLQLSVLSAeslrenFFLGGVTL 1673 ppnnahqhsadglihlsell.ggrh.kl<-* p l++ + ++ k+ eg01033 1674 P--------------LKDFNlSKETvKW 1687 //