hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-14263910/chunk_1/iprscan-20080808-14263910.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: eg01036 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08429.1.fs PLU-1-like protein 540.1 2.2e-159 2 PF08429.1.ls PLU-1-like protein 538.0 9e-159 1 PF02373.13.fs JmjC domain 240.5 1.4e-70 1 PF02373.13.ls JmjC domain 242.4 8.8e-70 1 PF01388.11.ls ARID/BRIGHT DNA binding domain 183.4 5.3e-52 1 PF00628.19.fs PHD-finger 162.6 9.1e-52 3 PF01388.11.fs ARID/BRIGHT DNA binding domain 181.4 2e-51 1 PF00628.19.ls PHD-finger 165.4 1.3e-46 3 PF02928.6.ls C5HC2 zinc finger 106.0 1e-28 1 PF02928.6.fs C5HC2 zinc finger 104.1 3.8e-28 1 PF02375.7.ls jmjN domain 98.1 2.5e-26 1 PF02375.7.fs jmjN domain 96.2 8.8e-26 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02375.7.ls 1/1 61 105 .. 1 53 [] 98.1 2.5e-26 PF02375.7.fs 1/1 61 105 .. 1 53 [] 96.2 8.8e-26 PF01388.11.fs 1/1 122 230 .. 1 116 [] 181.4 2e-51 PF01388.11.ls 1/1 122 230 .. 1 116 [] 183.4 5.3e-52 PF00628.19.ls 1/3 336 384 .. 1 51 [] 67.9 3e-17 PF00628.19.fs 1/3 336 384 .. 1 51 [] 66.0 9.2e-21 PF02373.13.ls 1/1 511 627 .. 1 126 [] 242.4 8.8e-70 PF02373.13.fs 1/1 511 627 .. 1 126 [] 240.5 1.4e-70 PF02928.6.ls 1/1 717 770 .. 1 59 [] 106.0 1e-28 PF02928.6.fs 1/1 717 770 .. 1 59 [] 104.1 3.8e-28 PF08429.1.ls 1/1 781 1113 .. 1 394 [] 538.0 9e-159 PF08429.1.fs 1/2 781 1113 .. 1 394 [] 536.3 3.1e-158 PF00628.19.fs 2/3 1204 1259 .. 1 51 [] 56.9 7.7e-18 PF00628.19.ls 2/3 1204 1259 .. 1 51 [] 58.8 1.7e-14 PF00628.19.ls 3/3 1650 1702 .. 1 51 [] 38.7 1.8e-08 PF00628.19.fs 3/3 1656 1702 .. 5 51 .] 39.8 2.3e-12 Alignments of top-scoring domains: PF02375.7.ls: domain 1 of 1, from 61 to 105: score 98.1, E = 2.5e-26 *->PvFkPtmeEFeDplaYIakIHirpgAekyGivKVvPPkeWLELLEGk PvF+P++eEF+Dpl++I + irp+Aek+Gi+K++PPk+W + eg01036 61 PVFEPSWEEFTDPLSFIGR--IRPLAEKTGICKIRPPKDW------Q 99 Ppcald<-* Pp+a++ eg01036 100 PPFACE 105 PF02375.7.fs: domain 1 of 1, from 61 to 105: score 96.2, E = 8.8e-26 *->PvFkPtmeEFeDplaYIakIHirpgAekyGivKVvPPkeWLELLEGk PvF+P++eEF+Dpl++I + irp+Aek+Gi+K++PPk+W + eg01036 61 PVFEPSWEEFTDPLSFIGR--IRPLAEKTGICKIRPPKDW------Q 99 Ppcald<-* Pp+a++ eg01036 100 PPFACE 105 PF01388.11.fs: domain 1 of 1, from 122 to 230: score 181.4, E = 2e-51 *->eaqtrerkeFldrLikFmekrgtpltkiPvvgkkeLDLYrLyrlVke ea+tr+r++Fld+L+kF+e +g+ ++kiPvv++k+LDLY+L+++V++ eg01036 122 EAMTRVRLDFLDQLAKFWELQGS-TLKIPVVERKILDLYALSKIVAS 167 kGGfqqVtkdkkWseiareLgipdsisRGVPSsagslLrshYmryLypfE kGGf++Vtk+kkWs+++++Lg+ +++ ++gslL+shY+r+Lyp+E eg01036 168 KGGFEMVTKEKKWSKVGSRLGYLPGK------GTGSLLKSHYERILYPYE 211 cyeeeenlrdeteaaddme<-* ++++ +l++ ++++ d + eg01036 212 LFQSGVSLMGVQMPNLDLK 230 PF01388.11.ls: domain 1 of 1, from 122 to 230: score 183.4, E = 5.3e-52 *->eaqtrerkeFldrLikFmekrgtpltkiPvvgkkeLDLYrLyrlVke ea+tr+r++Fld+L+kF+e +g+ ++kiPvv++k+LDLY+L+++V++ eg01036 122 EAMTRVRLDFLDQLAKFWELQGS-TLKIPVVERKILDLYALSKIVAS 167 kGGfqqVtkdkkWseiareLgipdsisRGVPSsagslLrshYmryLypfE kGGf++Vtk+kkWs+++++Lg+ +++ ++gslL+shY+r+Lyp+E eg01036 168 KGGFEMVTKEKKWSKVGSRLGYLPGK------GTGSLLKSHYERILYPYE 211 cyeeeenlrdeteaaddme<-* ++++ +l++ ++++ d + eg01036 212 LFQSGVSLMGVQMPNLDLK 230 PF00628.19.ls: domain 1 of 3, from 336 to 384: score 67.9, E = 3e-17 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC C +Cg+ +++++ll+CDgCd+++H++Cl ppl+ ++p+++W C eg01036 336 VCMFCGR--GNNEDKLLLCDGCDDSYHTFCLIPPLP--DVPKgdWRC 378 peCkpk<-* p+C+++ eg01036 379 PKCVAE 384 PF00628.19.fs: domain 1 of 3, from 336 to 384: score 66.0, E = 9.2e-21 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC C +Cg+ +++++ll+CDgCd+++H++Cl ppl+ ++p+++W C eg01036 336 VCMFCGR--GNNEDKLLLCDGCDDSYHTFCLIPPLP--DVPKgdWRC 378 peCkpk<-* p+C+++ eg01036 379 PKCVAE 384 PF02373.13.ls: domain 1 of 1, from 511 to 627: score 242.4, E = 8.8e-70 *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek wlYvGm+fS+++wHiEd+++ySinylh+g+pk+WYg+Ps++ae++e eg01036 511 WLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPSHAAEQLE- 556 lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ +v+++ aP+l +++qpdl l++lvt+++P+v L+e+g+pvyr++Q eg01036 557 --EVMREL--APEL-FESQPDL-LHQLVTIMNPNV--LMEHGVPVYRTNQ 598 kpGEfVitfPgayHavfNlGfniaeavNF<-* ++GEfV+tfP+ayH++fN G+n+aeavNF eg01036 599 CAGEFVVTFPRAYHSGFNQGYNFAEAVNF 627 PF02373.13.fs: domain 1 of 1, from 511 to 627: score 240.5, E = 1.4e-70 *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek wlYvGm+fS+++wHiEd+++ySinylh+g+pk+WYg+Ps++ae++e eg01036 511 WLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPSHAAEQLE- 556 lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ +v+++ aP+l +++qpdl l++lvt+++P+v L+e+g+pvyr++Q eg01036 557 --EVMREL--APEL-FESQPDL-LHQLVTIMNPNV--LMEHGVPVYRTNQ 598 kpGEfVitfPgayHavfNlGfniaeavNF<-* ++GEfV+tfP+ayH++fN G+n+aeavNF eg01036 599 CAGEFVVTFPRAYHSGFNQGYNFAEAVNF 627 PF02928.6.ls: domain 1 of 1, from 717 to 770: score 106.0, E = 1e-28 *->CqiCkttlyLSAvvCsCspnklvCLeCALRHvkdLCssCepkdltLl C +C+tt++LSA++CsC+p++lvCL+ H++dLC+ C++++++L+ eg01036 717 CSACRTTCFLSALTCSCNPERLVCLY----HPTDLCP-CPMQKKCLR 758 YRYtlDeLpsLv<-* YRY+l++LpsL+ eg01036 759 YRYPLEDLPSLL 770 PF02928.6.fs: domain 1 of 1, from 717 to 770: score 104.1, E = 3.8e-28 *->CqiCkttlyLSAvvCsCspnklvCLeCALRHvkdLCssCepkdltLl C +C+tt++LSA++CsC+p++lvCL+ H++dLC+ C++++++L+ eg01036 717 CSACRTTCFLSALTCSCNPERLVCLY----HPTDLCP-CPMQKKCLR 758 YRYtlDeLpsLv<-* YRY+l++LpsL+ eg01036 759 YRYPLEDLPSLL 770 PF08429.1.ls: domain 1 of 1, from 781 to 1113: score 538.0, E = 9e-159 *->etWrervreaLeaeskrLkrsLkelreLlsEgILNEkikfplFpeLl +tW++rv+eaL+a++++ k++L elr +l+++ E++k+p+ ++L+ eg01036 781 DTWVSRVTEALSANFNH-KKDLIELRVMLEDA---EDRKYPE-NDLF 822 enLrafvqeAeswvekaqqLlsrKmqqtRrktgkavpagrrkkskaasvd ++Lr++v+eAe+++++aq Lls+K q++R+ ++++ eg01036 823 RKLRDAVKEAETCASVAQLLLSKK-QKHRQSPDSG--------------- 856 deksrnkrtveeLraLlkqadsLpFdcpeliaqLkelleeiEeFreraqe ++r+k+tveeL+a+++q++sLp+++++ ++q+k+ll+++EeF+eraqe eg01036 857 --RTRTKLTVEELKAFVQQLFSLPCVISQ-ARQVKNLLDDVEEFHERAQE 903 aLseeleslslqecesLleeGsslgvelPEleeLrkyleqakWldeYLIv a+++e++ + +++++L+++Gssl+velPEl++L++ l+qa+Wlde v eg01036 904 AMMDETP--DSSKLQMLIDMGSSLYVELPELPRLKQELQQARWLDE---V 948 kestpwaststMEKDIDFEYKlrltlddvreLideGvslglpePadnkam + + +s+++ ++tld++++Lid Gv+l++++ a++kam eg01036 949 RLT---LSDPQ-----------QVTLDVMKKLIDSGVGLAPHH-AVEKAM 983 aeLqelltkaeaWeekAkelLkyasqnhsldkLeslWkskeasnwfipvs aeLqellt++e+WeekAk +L+ a+++hs+++Les+ ++ea+n ip++ eg01036 984 AELQELLTVSERWEEKAKVCLQ-ARPRHSVASLESI--VNEAKN--IPAF 1028 lpnlrklkdaLqkarewikqvesLqsgldlkrsadpdgdsvptldelkel lpn+++lk+aLqkarew+++ve +qs g+++++l++l+ l eg01036 1029 LPNVLSLKEALQKAREWTAKVEAIQS-----------GSNYAYLEQLESL 1067 vaageelpvklSEelrqLekevarveaWrerakklFgKkNapltlLe<-* +a+g+++pv+l E l+q+e +va ++aWrer+ ++F+KkN+ +tlL+ eg01036 1068 SAKGRPIPVRL-EALPQVESQVAAARAWRERTGRTFLKKNSSHTLLQ 1113 PF08429.1.fs: domain 1 of 2, from 781 to 1113: score 536.3, E = 3.1e-158 *->etWrervreaLeaeskrLkrsLkelreLlsEgILNEkikfplFpeLl +tW++rv+eaL+a++++ k++L elr +l+++ E++k+p+ ++L+ eg01036 781 DTWVSRVTEALSANFNH-KKDLIELRVMLEDA---EDRKYPE-NDLF 822 enLrafvqeAeswvekaqqLlsrKmqqtRrktgkavpagrrkkskaasvd ++Lr++v+eAe+++++aq Lls+K q++R+ ++++ eg01036 823 RKLRDAVKEAETCASVAQLLLSKK-QKHRQSPDSG--------------- 856 deksrnkrtveeLraLlkqadsLpFdcpeliaqLkelleeiEeFreraqe ++r+k+tveeL+a+++q++sLp+++++ ++q+k+ll+++EeF+eraqe eg01036 857 --RTRTKLTVEELKAFVQQLFSLPCVISQ-ARQVKNLLDDVEEFHERAQE 903 aLseeleslslqecesLleeGsslgvelPEleeLrkyleqakWldeYLIv a+++e++ + +++++L+++Gssl+velPEl++L++ l+qa+Wlde v eg01036 904 AMMDETP--DSSKLQMLIDMGSSLYVELPELPRLKQELQQARWLDE---V 948 kestpwaststMEKDIDFEYKlrltlddvreLideGvslglpePadnkam + + +s+++ ++tld++++Lid Gv+l++++ a++kam eg01036 949 RLT---LSDPQ-----------QVTLDVMKKLIDSGVGLAPHH-AVEKAM 983 aeLqelltkaeaWeekAkelLkyasqnhsldkLeslWkskeasnwfipvs aeLqellt++e+WeekAk +L+ a+++hs+++Les+ ++ea+n ip++ eg01036 984 AELQELLTVSERWEEKAKVCLQ-ARPRHSVASLESI--VNEAKN--IPAF 1028 lpnlrklkdaLqkarewikqvesLqsgldlkrsadpdgdsvptldelkel lpn+++lk+aLqkarew+++ve +qs g+++++l++l+ l eg01036 1029 LPNVLSLKEALQKAREWTAKVEAIQS-----------GSNYAYLEQLESL 1067 vaageelpvklSEelrqLekevarveaWrerakklFgKkNapltlLe<-* +a+g+++pv+l E l+q+e +va ++aWrer+ ++F+KkN+ +tlL+ eg01036 1068 SAKGRPIPVRL-EALPQVESQVAAARAWRERTGRTFLKKNSSHTLLQ 1113 PF00628.19.fs: domain 2 of 3, from 1204 to 1259: score 56.9, E = 7.7e-18 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..... +C +C+k a g++lqC+ C++wfH +C+ +p ++ ++++++ + eg01036 1204 FC-ICRK---TASGFMLQCELCKDWFHNSCVPLPKSSSQKKGsswqa 1246 ....WyCpeCkpk<-* ++ +++Cp C+++ eg01036 1247 kevkFLCPLCMRS 1259 PF00628.19.ls: domain 2 of 3, from 1204 to 1259: score 58.8, E = 1.7e-14 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..... +C +C+k a g++lqC+ C++wfH +C+ +p ++ ++++++ + eg01036 1204 FC-ICRK---TASGFMLQCELCKDWFHNSCVPLPKSSSQKKGsswqa 1246 ....WyCpeCkpk<-* ++ +++Cp C+++ eg01036 1247 kevkFLCPLCMRS 1259 PF00628.19.ls: domain 3 of 3, from 1650 to 1702: score 38.7, E = 1.8e-08 *->yCsv..CgkeysdaggdllqCD.gCdrwfHlaClgpplepeeipeWy C+ ++C+++ + d++qCD+gCd+wfH+ C+g ++e++e +++ eg01036 1650 VCAAqnCQRP-CKDKVDWVQCDgGCDEWFHQVCVGVSPEMAENEDYI 1695 CpeCkpk<-* C +C k eg01036 1696 CINCAKK 1702 PF00628.19.fs: domain 3 of 3, from 1656 to 1702: score 39.8, E = 2.3e-12 *->CgkeysdaggdllqCD.gCdrwfHlaClgpplepeeipeWyCpeCkp C+++ + d++qCD+gCd+wfH+ C+g ++e++e +++C +C eg01036 1656 CQRP-CKDKVDWVQCDgGCDEWFHQVCVGVSPEMAENEDYICINCAK 1701 k<-* k eg01036 1702 K 1702 //