hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-14390865/chunk_1/iprscan-20080808-14390865.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: eg01042 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00557 1859.7 0 16 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00557 1/16 50 141 .. 1 119 [] 156.1 3.7e-42 SM00557 2/16 143 236 .. 1 119 [] 132.0 6.5e-35 SM00557 3/16 238 336 .. 1 119 [] 129.6 3.5e-34 SM00557 4/16 338 429 .. 1 119 [] 138.1 9.3e-37 SM00557 5/16 431 525 .. 1 119 [] 149.4 3.8e-40 SM00557 6/16 527 622 .. 1 119 [] 123.6 2.1e-32 SM00557 7/16 624 718 .. 1 119 [] 139.0 4.9e-37 SM00557 8/16 741 830 .. 1 119 [] 47.1 2.3e-09 SM00557 9/16 831 922 .. 1 119 [] 142.1 5.8e-38 SM00557 10/16 923 1008 .. 1 119 [] 46.4 3.9e-09 SM00557 11/16 1012 1103 .. 1 119 [] 130.4 1.9e-34 SM00557 12/16 1112 1199 .. 1 119 [] 46.7 3e-09 SM00557 13/16 1203 1294 .. 1 119 [] 145.9 4.2e-39 SM00557 14/16 1297 1389 .. 1 119 [] 113.8 1.9e-29 SM00557 15/16 1394 1485 .. 1 119 [] 108.2 9.2e-28 SM00557 16/16 1522 1613 .] 1 119 [] 111.3 1.1e-28 Alignments of top-scoring domains: SM00557: domain 1 of 16, from 50 to 141: score 156.1, E = 3.7e-42 *->DaskvkasetLWkGpGLeggGlVVvvgepadiveFtvdtkgAggevd D+skvka GpGLegg vg+pa eFt+dtkgA eg01042 50 DPSKVKAH-----GPGLEGG----LVGKPA---EFTIDTKGA----- 79 pltGggeleVtvegPsGpckgknkvpvevkdngDGtytVsYtPtepGdyt G+g+l tvegP ++ +e+ dngDGt++VsY Pt+pG+y eg01042 80 ---GTGGLGLTVEGPC-------EAKIECSDNGDGTCSVSYLPTKPGEYF 119 vsVkfnGehipgSPFtvkVgpa<-* v+++f +hipgSPF+ + + eg01042 120 VNILFEEVHIPGSPFKADIEMP 141 SM00557: domain 2 of 16, from 143 to 236: score 132.0, E = 6.5e-35 *->DaskvkasetLWkGpGLeggGlVVvvgepadiveFtvdtkgAggevd D+skv+as GpGLe+g +vge+ + vd+++A eg01042 143 DPSKVVAS-----GPGLEHG----KVGEAG---LLSVDCSEA----- 172 pltGggeleVtvegPsGpckgknkvpvevkdngDGtytVsYtPtepGdyt G+g+l + ++ sG +k++v ++ n+DGty+V+Y+P ++G yt eg01042 173 ---GPGALGLEAVSDSG-----TKAEVSIQNNKDGTYAVTYVPLTAGMYT 214 vsVkfnGehipgSPFtvkVgpa<-* ++ k++Ge +p P +vkV pa eg01042 215 LTMKYGGELVPHFPARVKVEPA 236 SM00557: domain 3 of 16, from 238 to 336: score 129.6, E = 3.5e-34 *->DaskvkasetLWkGpGLeggGlVVvvgepadiveFtvdtkgAggevd D s++k++ GpG+eg++ V+ ++ +Ftvd + ++ eg01042 238 DTSRIKVF-----GPGIEGKD--VFREATT---DFTVDSRPLTQV-- 272 pltGggeleVtvegPsGpckgknkvpvevkdngDGtytVsYtPtepGdyt Gg+ +++ + +PsG ++ v+dn DGty V+YtP e G ++ eg01042 273 ---GGDHIKAHIANPSG-----ASTECFVTDNADGTYQVEYTPFEKGLHV 314 vsVkfnGehipgSPFtvkVgpa<-* v+V++++++ip+SPF+v V+++ eg01042 315 VEVTYDDVPIPNSPFKVAVTEG 336 SM00557: domain 4 of 16, from 338 to 429: score 138.1, E = 9.3e-37 *->DaskvkasetLWkGpGLeggGlVVvvgepadiveFtvdtkgAggevd +s+v a+ GpGL+++ ++++p+ Ftv t+gA eg01042 338 QPSRVQAQ-----GPGLKEA----FTNKPN---VFTVVTRGA----- 367 pltGggeleVtvegPsGpckgknkvpvevkdngDGtytVsYtPtepGdyt G g+l +tvegPs + + ++dn+DG+++++Y+P +pGdy eg01042 368 ---GIGGLGITVEGPS-------ESKINCRDNKDGSCSAEYIPFAPGDYD 407 vsVkfnGehipgSPFtvkVgpa<-* v+++++G hipgSPF+v V++ eg01042 408 VNITYGGAHIPGSPFRVPVKDV 429 SM00557: domain 5 of 16, from 431 to 525: score 149.4, E = 3.8e-40 *->DaskvkasetLWkGpGLeggGlVVvvgepadiveFtvdtkgAggevd D+skvk GpGL g V++ + + +Ftvd ++A eg01042 431 DPSKVKIA-----GPGLGSG---VRARVLQ---SFTVDSSKA----- 461 pltGggeleVtvegPsGpckgknkvpvevkdngDGtytVsYtPtepGdyt G ++leV+v gP G ++pv v+dngDGt+tV+YtP ++G+y eg01042 462 ---GLAPLEVRVLGPRG-----LVEPVNVVDNGDGTHTVTYTPSQEGPYM 503 vsVkfnGehipgSPFtvkVgpa<-* vsVk+++e+ip+SPF+vkV p+ eg01042 504 VSVKYADEEIPRSPFKVKVLPT 525 SM00557: domain 6 of 16, from 527 to 622: score 123.6, E = 2.1e-32 *->DaskvkasetLWkGpGLeggGlVVvvgepadiveFtvdtkgAggevd Daskv+as GpGL G V++ p+ +F +d+++A eg01042 527 DASKVTAS-----GPGLSSYG--VPASLPV---DFAIDARDA----- 558 pltGggeleVtvegPsGpckgknkvpvevkdngDGtytVsYtPtepGdyt G+g l V++++ +G ++ + v+dn+DGty+V+Y+P + G y eg01042 559 ---GEGLLAVQITDQEG-----KPKRAIVHDNKDGTYAVTYIPDKTGRYM 600 vsVkfnGehipgSPFtvkVgpa<-* + V+++G +ip SP++++++++ eg01042 601 IGVTYGGDDIPLSPYRIRATQT 622 SM00557: domain 7 of 16, from 624 to 718: score 139.0, E = 4.9e-37 *->DaskvkasetLWkGpGLeggGlVVvvgepadiveFtvdtkgAggevd Dask+ a+ GpG+ + V++ge++ F+vd+k A eg01042 624 DASKCLAT-----GPGIAST---VKTGEEV---GFVVDAKTA----- 654 pltGggeleVtvegPsGpckgknkvpvevkdngDGtytVsYtPtepGdyt G+g++++tv P+G ++++++v++n+DGty++ Yt+++pG+y+ eg01042 655 ---GKGKVTCTVLTPDG-----TEAEADVIENEDGTYDIFYTAAKPGTYV 696 vsVkfnGehipgSPFtvkVgpa<-* + V+f+G++ip+SPFtv+++++ eg01042 697 IYVRFGGVDIPNSPFTVMATDG 718 SM00557: domain 8 of 16, from 741 to 830: score 47.1, E = 2.3e-09 *->DaskvkasetLWkGpGLeggGlVVvvgepadiveFtvdtkgAggevd + v +s +g + ++ eg01042 741 EEAYVPVS-------DMNGL----GFKPFD---LVIPFAVRK----- 768 pltGggeleVtvegPsGpckgknkvpvevkdngDGtytVsYtPtepGdyt ge++ +v+ PsG + + e++dn+DGt tV+Y Pte+G ++ eg01042 769 -----GEITGEVHMPSG-----KTATPEIVDNKDGTVTVRYAPTEVGLHE 808 vsVkfnGehipgSPFtvkVgpa<-* ++k+ G hip SP +++V + eg01042 809 MHIKYMGSHIPESPLQFYVNYP 830 SM00557: domain 9 of 16, from 831 to 922: score 142.1, E = 5.8e-38 *->DaskvkasetLWkGpGLeggGlVVvvgepadiveFtvdtkgAggevd ++ v+a+ GpGL g v++++a +Ft+ t +A eg01042 831 NSGSVSAY-----GPGLVYG----VANKTA---TFTIVTEDA----- 860 pltGggeleVtvegPsGpckgknkvpvevkdngDGtytVsYtPtepGdyt G+g+l+ ++egPs k+++ ++dn+DGt+tV+Y Pt pGdy eg01042 861 ---GEGGLDLAIEGPS-------KAEISCIDNKDGTCTVTYLPTLPGDYS 900 vsVkfnGehipgSPFtvkVgpa<-* + Vk+n++hipgSPFt k+++ eg01042 901 ILVKYNDKHIPGSPFTAKITDD 922 SM00557: domain 10 of 16, from 923 to 1008: score 46.4, E = 3.9e-09 *->DaskvkasetLWkGpGLeggGlVVvvgepadiveFtvdtkgAggevd + +++ + + g +a +F d ++ + eg01042 923 -SRRCS------------QV----KLGSAA---DFLLDISETDLS-- 947 pltGggeleVtvegPsGpckgknkvpvevkdngDGtytVsYtPtepGdyt l++++ PsG +++p+ +k +++++ +s++P+e+G++ eg01042 948 ------SLTASIKAPSG-----RDEPCLLKRLPNNHIGISFIPREVGEHL 986 vsVkfnGehipgSPFtvkVgpa<-* vs+k nG h+ +SP +++V+++ eg01042 987 VSIKKNGNHVANSPVSIMVVQS 1008 SM00557: domain 11 of 16, from 1012 to 1103: score 130.4, E = 1.9e-34 *->DaskvkasetLWkGpGLeggGlVVvvgepadiveFtvdtkgAggevd Da + k++ G+GL +g ++ e +F vdt++A eg01042 1012 DARRAKVY-----GRGLSEG----RTFEMS---DFIVDTRDA----- 1041 pltGggeleVtvegPsGpckgknkvpvevkdngDGtytVsYtPtepGdyt G g+++ +vegPs kv+++ +d++DGt++VsY Pt+pG+y+ eg01042 1042 ---GYGGISLAVEGPS-------KVDIQTEDLEDGTCKVSYFPTVPGVYI 1081 vsVkfnGehipgSPFtvkVgpa<-* vs kf++eh+pgSPFtvk+++ eg01042 1082 VSTKFADEHVPGSPFTVKISGE 1103 SM00557: domain 12 of 16, from 1112 to 1199: score 46.7, E = 3e-09 *->DaskvkasetLWkGpGLeggGlVVvvgepadiveFtvdtkgAggevd s+ p + +vg +d +++ + eg01042 1112 RTSR---------APSVA------TVGSICDL-NLKIPEINS----- 1137 pltGggeleVtvegPsGpckgknkvpvevkdngDGtytVsYtPtepGdyt + ++ v++PsG ++ ++e+++ g +++ V+++P+e G++t eg01042 1138 -----SDMSAHVTSPSG-----RVTEAEIVPMGKNSHCVRFVPQEMGVHT 1177 vsVkfnGehipgSPFtvkVgpa<-* vsVk+ G+h+ gSPF++ Vgp eg01042 1178 VSVKYRGQHVTGSPFQFTVGPL 1199 SM00557: domain 13 of 16, from 1203 to 1294: score 145.9, E = 4.2e-39 *->DaskvkasetLWkGpGLeggGlVVvvgepadiveFtvdtkgAggevd a+kv+a GpGLe+g ++g+pa eF ++t++A eg01042 1203 GAHKVRAG-----GPGLERG----EAGVPA---EFSIWTREA----- 1232 pltGggeleVtvegPsGpckgknkvpvevkdngDGtytVsYtPtepGdyt G+g+l+++vegPs k++++ d+++G++ VsY+++epG+y+ eg01042 1233 ---GAGGLSIAVEGPS-------KAEITFDDHKNGSCGVSYIAQEPGNYE 1272 vsVkfnGehipgSPFtvkVgpa<-* vs+kfn+ehip SP+ v V ++ eg01042 1273 VSIKFNDEHIPESPYLVPVIAP 1294 SM00557: domain 14 of 16, from 1297 to 1389: score 113.8, E = 1.9e-29 *->DaskvkasetLWkGpGLeggGlVVvvgepadiveFtvdtkgAggevd Da + +++ L+++Gl +v++pa +F ++ +gA eg01042 1297 DARRLTVM-------SLQESGL--KVNQPA---SFAIRLNGA----- 1326 pltGggeleVtvegPsGpckgknkvpvevkdngDGtytVsYtPtepGdyt +g+++++v++PsG +++++v +++ +y+V+++P e G++t eg01042 1327 ----KGKIDAKVHSPSG-----AVEECHVSELEPDKYAVRFIPHENGVHT 1367 vsVkfnGehipgSPFtvkVgpa<-* ++VkfnG h+ gSPF+v+Vg++ eg01042 1368 IDVKFNGSHVVGSPFKVRVGEP 1389 SM00557: domain 15 of 16, from 1394 to 1485: score 108.2, E = 9.2e-28 *->DaskvkasetLWkGpGLeggGlVVvvgepadiveFtvdtkgAggevd +++ v+a+ G GLegg ++g eF ++t A eg01042 1394 NPALVSAY-----GTGLEGG----TTGIQS---EFFINTTRA----- 1423 pltGggeleVtvegPsGpckgknkvpvevkdngDGtytVsYtPtepGdyt G+g l+Vt+egPs kv +++++ + G y+V YtP +pG+y eg01042 1424 ---GPGTLSVTIEGPS-------KVKMDCQETPEG-YKVMYTPMAPGNYL 1462 vsVkfnG.ehipgSPFtvkVgpa<-* +sVk++G+ hi gSPF+ kV++ eg01042 1463 ISVKYGGpNHIVGSPFKAKVTGQ 1485 SM00557: domain 16 of 16, from 1522 to 1613: score 111.3, E = 1.1e-28 *->DaskvkasetLWkGpGLeggGlVVvvgepadiveFtvdtkgAggevd Daskv+ G GL ++ +vg++ +F vd+++A eg01042 1522 DASKVTSK-----GAGLSKA----FVGQKS---SFLVDCSKA----- 1551 pltGggeleVtvegPsGpckgknkvpvevkdngDGtytVsYtPtepGdyt G+ l + v+gP pc ++v +k+ g+ y+V+Y+++e Gdy+ eg01042 1552 ---GSNMLLIGVHGPTTPC-----EEVSMKHVGNQQYNVTYVVKERGDYV 1593 vsVkfnGehipgSPFtvkVgpa<-* + Vk++ ehipgSPF +V+ + eg01042 1594 LAVKWGEEHIPGSPF--HVTVP 1613 //